Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi2g209 | ATGGATACTGCTCAGTGGCCACAGGAGATTGTGGTGAAACCACTAGAGGAGATAGTCACAAATACATGTCCAAAGCCTGCTTTGGAGAAGAGGGCAAGACCTCAGAAAGAGCAAGCTTTGAACTGCCCAAGGTGCAATTCAACCAACACTAAGTTCTGCTATTACAACAACTACAGTCTCTCTCAGCCAAGGTACTTTTGCAAGGCTTGTAGAAGGTATTGGACTGAAGGTGGGTCTCTCAGAAATATTCCAGTTGGTGGGGGTTCAAGGAAGAACAAGAGATCATCATCTTCTTCTTCATCATCTTCATCTTCAGCTTCATCAAAGAAGCTTCCTGATCTGCCGCTCAAGATTTCAGAAGTCTTTGGAGCTGCTCACTGGGATCACTTCAAGGGGGTTGAATTCCTTCATGCCCATGCCAATTCCTGA | 429 | 45.45 | MDTAQWPQEIVVKPLEEIVTNTCPKPALEKRARPQKEQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKACRRYWTEGGSLRNIPVGGGSRKNKRSSSSSSSSSSSASSKKLPDLPLKISEVFGAAHWDHFKGVEFLHAHANS* | 143 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2012749 | 2013969 | + | Vvi2g209 | Vvi2g209 | 782908 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi2g209 | 142 | PANTHER | DOF ZINC FINGER PROTEIN DOF4.6-LIKE | 1 | 106 | - | - | |
Vvi2g209 | 142 | ProSiteProfiles | Zinc finger Dof-type profile. | 40 | 94 | IPR003851 | GO:0003677|GO:0006355 | |
Vvi2g209 | 142 | MobiDBLite | consensus disorder prediction | 78 | 111 | - | - | |
Vvi2g209 | 142 | ProSitePatterns | Zinc finger Dof-type signature. | 42 | 78 | IPR003851 | GO:0003677|GO:0006355 | |
Vvi2g209 | 142 | Pfam | Dof domain, zinc finger | 38 | 94 | IPR003851 | GO:0003677|GO:0006355 | |
Vvi2g209 | 142 | MobiDBLite | consensus disorder prediction | 89 | 110 | - | - | |
Vvi2g209 | 142 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 1 | 106 | IPR045174 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Vvi2g209 | Vvi15g660 | ECH | |
Vvi2g209 | Vvi16g1009 | ECH |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14569 | PF02701 | zf-Dof | 2.60E-34 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi2g209 | - | - | vvi:100266812 | 219.164 |