Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g209 ATGGATACTGCTCAGTGGCCACAGGAGATTGTGGTGAAACCACTAGAGGAGATAGTCACAAATACATGTCCAAAGCCTGCTTTGGAGAAGAGGGCAAGACCTCAGAAAGAGCAAGCTTTGAACTGCCCAAGGTGCAATTCAACCAACACTAAGTTCTGCTATTACAACAACTACAGTCTCTCTCAGCCAAGGTACTTTTGCAAGGCTTGTAGAAGGTATTGGACTGAAGGTGGGTCTCTCAGAAATATTCCAGTTGGTGGGGGTTCAAGGAAGAACAAGAGATCATCATCTTCTTCTTCATCATCTTCATCTTCAGCTTCATCAAAGAAGCTTCCTGATCTGCCGCTCAAGATTTCAGAAGTCTTTGGAGCTGCTCACTGGGATCACTTCAAGGGGGTTGAATTCCTTCATGCCCATGCCAATTCCTGA 429 45.45 MDTAQWPQEIVVKPLEEIVTNTCPKPALEKRARPQKEQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKACRRYWTEGGSLRNIPVGGGSRKNKRSSSSSSSSSSSASSKKLPDLPLKISEVFGAAHWDHFKGVEFLHAHANS* 143
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 2012749 2013969 + Vvi2g209 Vvi2g209 782908
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g209 142 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 106 - -
Vvi2g209 142 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Vvi2g209 142 MobiDBLite consensus disorder prediction 78 111 - -
Vvi2g209 142 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Vvi2g209 142 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Vvi2g209 142 MobiDBLite consensus disorder prediction 89 110 - -
Vvi2g209 142 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 106 IPR045174 GO:0003700|GO:0006355
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Vvi2g209 Vvi15g660 ECH
Vvi2g209 Vvi16g1009 ECH
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14569 PF02701 zf-Dof 2.60E-34 No_clan Vvi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g209 - - vvi:100266812 219.164