Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g210 ATGGCGAAGCTCTACGTTCAGGCCCTGCCGCCAACGGATCTCAACCGGAACACCGAGTGGTTCACCTACCCCGGCGTCTGGACCACCTACATCCTCATCCTCTTCTTCTCTTGGCTCCTCGTCCTCTCCCTCCTTCGCTGCTCCTCCGGCGCCGCCTGGACCATTCTCCACCTCTCCCATTTCCTGGTTACTTATCACTGCTTTCACTGGAAGAAGGGAACACCATTCGCGGATGACCAGGGTATCTACAATAGGCTAACCTGGTGGGAGCAAATAGACAGTGGGAAGCAGCTCACTCGCAATAGAAAGTTTCTCACTGTTGTGCCCTTGGTGCTGTACTTAATAGCCTCGCATACAACCGACTACCAACACCCCATGCTGTTCTTTAATACACTGGCAGTTTTTGTGCTAGTGGTTGCCAAGTTCCCAAACATGCACAAGGTCAGGATATTTGGAATCAATGCAGATCACTGA 474 52.11 MAKLYVQALPPTDLNRNTEWFTYPGVWTTYILILFFSWLLVLSLLRCSSGAAWTILHLSHFLVTYHCFHWKKGTPFADDQGIYNRLTWWEQIDSGKQLTRNRKFLTVVPLVLYLIASHTTDYQHPMLFFNTLAVFVLVVAKFPNMHKVRIFGINADH* 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2016485 2019135 - Vvi2g210 Vvi2g210 782909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g210 157 PANTHER ORMDL FAMILY PROTEIN 1 156 - -
Vvi2g210 157 PANTHER ORMDL PROTEINS 1 156 IPR007203 GO:0005789|GO:0016021
Vvi2g210 157 PIRSF ORM1 3 157 IPR007203 GO:0005789|GO:0016021
Vvi2g210 157 Pfam ORMDL family 15 149 IPR007203 GO:0005789|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g210 - - - vvi:100244495 322.783
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g210 Vvi15g659 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g210 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004289 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 4 1 2 43