Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g211 ATGGACAAAGCTGGAGCAGCCAAGTCATGCACACTTGGTGACAGGAGTACTAGCGACATTACCGTACGACTGACTAATAGAGAAGGCAGGCCGGAATGGTTCTACTCTCACTCTTCCATTCTTATAAACAAGAGCAAGTTCTTTGCAGACCAGCTCTCTCATCTGGATTCTACAGCTTGCATCGAGATTCACTGCTCAGATTTTGATTATGATCATCACGTTAGTCTTTTGAGGCTGCTCTATCTGCCTGAGGATTCAGTTGTTGACTCTTTCGATTCTGTTAAGACTGCTATTGGGATTCTTCAGGTGGCTGTTGCCTTACACTGTGAAGAAATCACACGGAGTTGCATCCAGTACTTGGAGGCTATTCCCTGGGAGGACAAGGAAGAGGAGGAGATCTTAAAAGCAGTTTCGAAACTGGGTCCAGTAGCCATGCCCATAGTGGCCAGGTTACAACCTGTAGATCTAAGCACCACAAGAAATGTTTTTGTTTCTGCAATTCGATTTGCCACATCCATTGCAGCACCCTGTCTTCCTTTTGGAGATGAGCTTAAAACTTCTGCTCAGGAACAAGTAGAATACATGCTTGGGGAAGATGAAGATACATCACTGATTACAGCAGATGATGAAGTAAAATTGGTGGTAAAAATGGGCCTTTCCCAGATTTGTTCTTCATTCGAAAAGGAATTATCTTCATTGCTTTTGGAGTCTGATCTTACATCTGAGGCAGTGGAAGATAGAGTACTGAGGAGCCTATCAGACCTTGAATGGATGTGTAATATACTTCCCAAGATGGATTTGATGAAGGAATTTGTTTCTAACTGGACTGAAATCTCTGGACGCATTTTGACAGTGGTTGAGGACAGGAAACTTGATTCTCTCATGTGGGGTTTGAAAGTAAAGCTGATAGAAGTGACAGGAAAGACCTGGCTTCCCTACATAAGAAAAATGAAGCCTCTTTTGGATTCAAAAGGACATGAAGACCTGGGTTTTCCCCACAAAATGGATGAGGACCTGTGTGAAAGCATTGAAGGCGCAATTATCTCACTGATACTGGCACTGCCATCAAACGATCAAGCTGATATTCTGGCAGACTGGATGAAGACTGAGCAGGTGAGGTATCCTGATTTGAGCGAAGCTTTTGAGGTCTGGTGTTACAGAACCAAGTCTGCAAAGAGAAGACTGGTGGAGGGGCTGGACAAAGTCGGCAACGCTGCACCATGGATGAGATCCCCACTAATACATAATAGATTACAATTATGA 1263 43.78 MDKAGAAKSCTLGDRSTSDITVRLTNREGRPEWFYSHSSILINKSKFFADQLSHLDSTACIEIHCSDFDYDHHVSLLRLLYLPEDSVVDSFDSVKTAIGILQVAVALHCEEITRSCIQYLEAIPWEDKEEEEILKAVSKLGPVAMPIVARLQPVDLSTTRNVFVSAIRFATSIAAPCLPFGDELKTSAQEQVEYMLGEDEDTSLITADDEVKLVVKMGLSQICSSFEKELSSLLLESDLTSEAVEDRVLRSLSDLEWMCNILPKMDLMKEFVSNWTEISGRILTVVEDRKLDSLMWGLKVKLIEVTGKTWLPYIRKMKPLLDSKGHEDLGFPHKMDEDLCESIEGAIISLILALPSNDQADILADWMKTEQVRYPDLSEAFEVWCYRTKSAKRRLVEGLDKVGNAAPWMRSPLIHNRLQL* 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2020338 2023481 - Vvi2g211 Vvi2g211 782910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g211 420 Gene3D Potassium Channel Kv1.1; Chain A 8 123 IPR011333 -
Vvi2g211 420 PANTHER BTB/POZ DOMAIN PROTEIN 1 309 - -
Vvi2g211 420 PANTHER BTB/POZ DOMAIN PROTEIN 308 406 - -
Vvi2g211 420 Pfam BTB/POZ domain 16 121 IPR000210 GO:0005515
Vvi2g211 420 ProSiteProfiles BTB domain profile. 18 89 IPR000210 GO:0005515
Vvi2g211 420 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 308 406 IPR038920 -
Vvi2g211 420 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 1 309 IPR038920 -
Vvi2g211 420 SUPERFAMILY POZ domain 15 120 IPR011333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g211 - - - vvi:100249644 776.933
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g211 . . . . . . . . . . . Cma15g01307 . Car15g01177 . . . . . . . . . . . . . . . . . . . . . . Csa05g00178 Chy09g01318 . . . . . . . . . . . Cmo15g01374 . . . . . . Bhi12g00101 . . Lac11g1944 Hepe06g1449 . Lcy12g1539 Cla01g00158 Cam01g0164 Cec01g0161 Cco01g0165 Clacu01g0160 Cmu01g0159 Cre09g2347 Lsi09g00150 . . Cme09g01867
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012900 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14570 PF00651 BTB 2.20E-06 CL0033 Vvi TR