Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g217 ATGGCAGACACAATCATTACCTCTGAGAATCCATCCCTTTCGTCGCCATTGAATCCCTCAAACCGCATAATCTGCCGAGTGTGTCAAAAGCAGTTTTCACAGTACACTTGCCCTAGATGCAATTCCCGGTATTGTTCACTTCAGTGTTACAAGTCTCATAGTCTTCGATGCACAGAATCCTTCATGCGAGAAAATGTAGTGGAGGAGCTGGGGCAGATGCAACCAGATGATGAAACCAAACATAAAATGTTGGACATACTCAAACGGTTCCATTCAGAAGAGGACATGGATAGCATGGATGAGGATGATTCAGGTCTGTCTGAGGAGACGATTCAGAAAATTTTATCAGGATGTCAAGTCAGCTTTGACGATTTATCTCCCAATGAAAAGAGACTATTCCAAAGAGCTGTGGCATCTGGAGAACTGAGCAAGATGATTGAACCCTGGGTTCCATGGTGGTTGAAGCCTGCTGCTAGAACGCTATCTCTCAGCCAGGAAGGAACTCAACTTGTCCAACCACTCATCAAGCAAGAAACATCAGTATCATCGGAAGATGACCCAGAAAGTAATCAAGCAAATGAGATCCCTCCTGGCCCTGAAACCCCATTTCCCCCTGTTAGCAAGCTTATTGCCACAGAGCCATCCCCGCTTTTAACTGTTCACCTGGTTGACATTCTATACAGCTACTGTTTCACCCTCCGCATCTACAATGGAGATTGGCGATCAGATGCATTAGGATCAGCCATGGTGTTATTGAGCATATCATCTGTCTTGGGTCAAGCTGGGCTGCCTGAAACCATATTGGAAGCTGTGTCTCATTGCTTGGAGCAGACATGCTCTCCTGCTTACAGACACCTTGGTGGCCTGCAATTTGGACTGGGACTCCTCGATGATGTGATAACTCTACTCTCCCTTGGGAGCCCTGCTCTAGTCTGCTCCCTTTGTGATCTGCAGAGGCTGATCCAGGCTGGGGAAAGGGAGCTGAAGCTAGGAAAGCCGAGAAAGTCGAAAAGGCCAGATATAAGAAGTAAGCTGAAGCTTGCAGAGAGGAAGATATACTTCATTATGTGCTGGGTCCATGAGCAGCCAGATGAAGCCTGGTCTTCCTTGGCAGCCATTGTAAAGACCGAGAAGGGTTCAACAATGGACTTTGCAGCCAGTCAAAGGTCTGTCAAAATGGAAGATAAATCAAAATCCAGAGGCAAGATTCTCATCGAGGAGGTTCAATGA 1230 46.67 MADTIITSENPSLSSPLNPSNRIICRVCQKQFSQYTCPRCNSRYCSLQCYKSHSLRCTESFMRENVVEELGQMQPDDETKHKMLDILKRFHSEEDMDSMDEDDSGLSEETIQKILSGCQVSFDDLSPNEKRLFQRAVASGELSKMIEPWVPWWLKPAARTLSLSQEGTQLVQPLIKQETSVSSEDDPESNQANEIPPGPETPFPPVSKLIATEPSPLLTVHLVDILYSYCFTLRIYNGDWRSDALGSAMVLLSISSVLGQAGLPETILEAVSHCLEQTCSPAYRHLGGLQFGLGLLDDVITLLSLGSPALVCSLCDLQRLIQAGERELKLGKPRKSKRPDIRSKLKLAERKIYFIMCWVHEQPDEAWSSLAAIVKTEKGSTMDFAASQRSVKMEDKSKSRGKILIEEVQ* 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2075829 2079813 + Vvi2g217 Vvi2g217 782916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g217 409 MobiDBLite consensus disorder prediction 177 196 - -
Vvi2g217 409 Pfam SHQ1 protein 212 324 IPR007009 -
Vvi2g217 409 SUPERFAMILY HIT/MYND zinc finger-like 21 59 - -
Vvi2g217 409 MobiDBLite consensus disorder prediction 177 206 - -
Vvi2g217 409 ProSiteProfiles Zinc finger HIT-type profile. 25 57 IPR007529 -
Vvi2g217 409 Gene3D - 14 66 - -
Vvi2g217 409 PANTHER ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 2 PROTEIN FON -RELATED 20 382 IPR039646 -
Vvi2g217 409 Pfam HIT zinc finger 22 51 IPR007529 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g217 - - - vvi:100258139 780.785
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g217 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011594 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 30