Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g219 ATGGGGCGCGGGAAGATAACGATCAAGAAGATTGAGGACAAAACTGTGAGGCAAATCACCTTCTCAAAGCGAAGAGCAGGGCTGCTGAAGAAGACCCATGAACTTTCTGTGCTCTGCGATGCTCAGATTGGGCTCATCATCTTCTCAAACACAGGGAAGATGTTCGAGTACTGCAGCAACTCATCAAGAATGGAGCAAATAGTAGAAAGATATCAGAAAGCTAAGGGGACATTTAAACATGATAACAAGCTGAAAATACACCATATTGATGAGCTGAAAAGGATAAGAGATGAAACTCATCATCTTCAATTGACCTTACAACACCACTCCACCACTCATGACTTGAGCTCCATAAGATATGAGGATTTGGAGGAGCTTGAACAACAGCTAGAGCACTCAATGAACAAGGTCCGCGTCCTCAAGAATCACACTCCTTTAACTGATGATAGTGATTTTGAGGAGAAAGATCCCACAGGTCGATACGTTAGGTATAATGAATTCTTGGGGAAAGGAGCATTCAAGACTGTATACAAGGCATTTGATGAAGTAGATGGAATAGAAGTCGCATGGGGTCAAGTGGAAATTGAGGATTTGTTACAGTCCCCTCAACAGCTGGAAAGATTATATTCAGAGGTTCATCTGCTGAAGTCATTGAAACACGATAACATCATCAAGTTCTATAACTCTTGGGTTGATGATACGAACAAGACTATTAACTTGATTACAGAGTTATTCACTTCTGGGAGTTTGAGACAATATCGGAAGAAGCATAAGAATGTTGACCTCAAGGCCATCAAGAACTGGGCGAAGCAGATCCTTCGAGGTTTACACTATCTCCACAGTCACAATCCGCCCATTATTCATAGGGATTTAAAATGTGATAACATTTTTGTTAATGGTAATAATGGAGAAGTTAAAATTGGAGATCTGGGTTTGGCAATTGTCATGCAGCAACCTACTGCACGAAGTGTTATTGGTACTCCAGAGTTCATGGCACCAGAGCTTTATGAAGAGGAATATAATGAACTCGTTGACATATATTCTTTTGGCATGTGCATATTAGAGTTGGTTACATGTGAATACCCATATAATGAATGCAAAAATCCTGCACAAATATATAAGAAGGTTTCTTCGGGTATAAAGCCTGCTTCCCTTGGTAAAGTGAGTGACCCCCAAGTCAAGCAGTTCATAGAGAAGTGTTTGGTTCCAGCATCCTTGAGATTGTCTGCACAAGAGCTCTTAAAGGACGCATTCTTCGCCACAGAAAATTCAAAGGAGCCTCTTTCAGTGAGCACTCATAAGAGTATGAGCACTCACATGAAAAGCATCAGTGGAACTCCTCATTTTCGTGCTCTACAATTTGAGAGGTTCAACAAAAATAATCTCTTCAAGTTAAGAGGGGAGAAAATTGATGATAATTCAATCTCAATGACCTTGCACATAGCTGATCCATGTGGTCGAGCAAAGAATATCCATTTTGCATTTTATCTTGATTCTGATACTGCACTTTCAATAGCTGGTGAGATGGTTGAACAACTGGATTTGTATAATGAAGATGTGGCAGTCATAGCTGAGTTAATTGATGTTATGATATCCGAGCTTGTACCCACATGGAAACCTGCATTTGAGAGCATGTTATGCATCCTAGTGATTCAGGTTCAGCTAAGGGTACATCAGATGCAGTTACTGAACATCTTATCTCACTATACAACGGTAATATTGGTGAACCTGCTGATTGGCTTAATTATAATTTCTGATTTGCTAATTCTGATCAATGACCCTTTAAAATGA 1791 39.98 MGRGKITIKKIEDKTVRQITFSKRRAGLLKKTHELSVLCDAQIGLIIFSNTGKMFEYCSNSSRMEQIVERYQKAKGTFKHDNKLKIHHIDELKRIRDETHHLQLTLQHHSTTHDLSSIRYEDLEELEQQLEHSMNKVRVLKNHTPLTDDSDFEEKDPTGRYVRYNEFLGKGAFKTVYKAFDEVDGIEVAWGQVEIEDLLQSPQQLERLYSEVHLLKSLKHDNIIKFYNSWVDDTNKTINLITELFTSGSLRQYRKKHKNVDLKAIKNWAKQILRGLHYLHSHNPPIIHRDLKCDNIFVNGNNGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDIYSFGMCILELVTCEYPYNECKNPAQIYKKVSSGIKPASLGKVSDPQVKQFIEKCLVPASLRLSAQELLKDAFFATENSKEPLSVSTHKSMSTHMKSISGTPHFRALQFERFNKNNLFKLRGEKIDDNSISMTLHIADPCGRAKNIHFAFYLDSDTALSIAGEMVEQLDLYNEDVAVIAELIDVMISELVPTWKPAFESMLCILVIQVQLRVHQMQLLNILSHYTTVILVNLLIGLIIISDLLILINDPLK* 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2093245 2099598 + Vvi2g219 Vvi2g219 782918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g219 596 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi2g219 596 Coils Coil 120 143 - -
Vvi2g219 596 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 489 531 IPR024678 GO:0004674|GO:0005524
Vvi2g219 596 Gene3D Transferase(Phosphotransferase) domain 1 245 426 - -
Vvi2g219 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672|GO:0006468
Vvi2g219 596 Gene3D - 473 545 - -
Vvi2g219 596 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vvi2g219 596 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Vvi2g219 596 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi2g219 596 CDD STKc_WNK 160 419 - -
Vvi2g219 596 Pfam K-box region 90 154 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi2g219 596 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi2g219 596 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi2g219 596 ProSiteProfiles Protein kinase domain profile. 162 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g219 596 Gene3D Phosphorylase Kinase; domain 1 146 243 - -
Vvi2g219 596 Pfam Protein kinase domain 165 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g219 596 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 147 553 - -
Vvi2g219 596 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Vvi2g219 596 SUPERFAMILY Protein kinase-like (PK-like) 153 419 IPR011009 -
Vvi2g219 596 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi2g219 596 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi2g219 596 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi2g219 596 PANTHER WNK KINASE 147 553 - -
Vvi2g219 596 SMART serkin_6 162 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g219 Vvi15g655 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14571 PF00069 Pkinase 1.30E-52 CL0016 Vvi TF
76533 PF00069 Pkinase 1.30E-52 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g219 K08867 - vvi:100246117 776.163