Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g220 ATGGGGGAGGTTGTTGGGCCAAGATTGTATAGTTGCTGTAATTGCCGAAACCATGTTGCTCTTCATGATGATGTTATTTCTAAAGCATTTCAGGGAAGACATGGCCGGGCCTTCCTGTTCTCTCATGCGATGAATGTTAATGTTGGGCCCAAAGAGGACAGGCACCTCATGACTGGTCTCCACACTGTTGCGGATGTTTTCTGTTGTGACTGCTGTCAGGTGCTGGGTTGGAAGTATGAACGTGCTTATGAAGAATCACAGAAATACAAGGAAGGGAAGTTCATACTTGAGAAGTCCAAAATTGTCAAGGAAAACTGGTAA 321 44.86 MGEVVGPRLYSCCNCRNHVALHDDVISKAFQGRHGRAFLFSHAMNVNVGPKEDRHLMTGLHTVADVFCCDCCQVLGWKYERAYEESQKYKEGKFILEKSKIVKENW* 107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2100593 2102056 - Vvi2g220 Vvi2g220 782919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g220 106 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 10 102 IPR004910 -
Vvi2g220 106 PANTHER PROTEIN YIPPEE-LIKE CG15309-RELATED 1 106 IPR039058 -
Vvi2g220 106 PANTHER PROTEIN YIPPEE-LIKE 1 106 - -
Vvi2g220 106 ProSiteProfiles Yippee domain profile. 8 105 IPR034751 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g220 - - - vvi:100241103 232.646
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g220 Vvi15g653 ECH
Vvi2g220 Vvi16g1005 ECH
Vvi2g220 Vvi16g1006 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g220 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00033 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002328 1 4 0 1 1 2 2 1 2 2 1 1 1 2 2 1 1 1 3 2 2 3 2 1 3 2 2 3 8 3 60