Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g23 ATGCTGAGTACAGTTGGTTTGGAACTTACTAGCCTTATCAATTCTGACTTGACTTGGAAGAAGGCTTCAAAAGGTAGGAGCGCATCCAGACGGGCTAGGAAACCAGTTGCAAGGTGTTCAAAAGCTGGTGGGGAGCTTGTCAATAAGGATCCCAAAAGGGTGGCCATGCCAGTTTCTGAGTCGGAGAAGCTTGGAGTGAGTGTTCTTGGGTGCCGCTTCAGTGAAAAGGCAGAACACATACCAATTAAAAAACGGAGATTTTTGTTCAGGTCTCCTTCACCACCATCTAAAAACTCTTCTCCACGGTCTGAGGAGACCACTGATGATGCTGCTGCTGCTTCTGGTACTGACTTGGGTAAAATTGTTGATACTGAACTTGATTGTGATAGGAAGAACTTGGTCAAGGTAAACGAATTTCCTGGTGCCAATGAAGATTTCTCAGGTATTTCAATACTTGCAGCTGCTGCATGCAGTAGCAGCATGGGAGGAGAAGATGGTTTTGAGGAGGGGGTTTCCCGAGATGGAGAATCTTCTGCACATGAGGGTCCTCTTGATGTTTTGGTGAATAATGAATTATGTTCGTTGTCAAAGGGATTTCCCATGGAAGACCTTGTGAGTTCTGCTAAAGTTTCTACTGAAGAAGCTGGTTCCTGTTCTTCCCCAGTGCCCGAAAAAGAACTTGCTGCCTCATCAAGAACTGAAAATTCCTTACTAAAATGTCAGGCACATGGACAAAACATGGAGGGCACATCTTTTCCAGATAGTCATGTGACTGTGTCACAAGATCTTTTAAGAAATAAGGATGATGAAACAGCTAGAACACATGAGTCTTCCTTGCGAGATGATCGATCACATTGGGATTTAAATACTGCAATGGATGCATGGGAACGTCCTTTTGAGTATCAATGTTGCGATCCTCAGTTTAATGTTGGAGATAGCATCTCTGAAGATGTTGATGATGGTAAGACTAGTGATAAGATGGAGAAGTCTGAAGGCTGTGAATTAGAGAGGGAATCCGGAGGAACCAATGGAAAGATACTGCTGCCAAGTGACTCAAGTGGATTGGCTCAGACTCAAGAATTGAATATAGAGGAACATGGATCTGATTCAGACTCTGGTATTAATGAGTCTATCTGTTTACAAGAAAAGTTTGTTTCTTCTTCTGAGATCATCAATGCCTCAAAGACTGATCTACCTCAAGAATTGGAATCCTTGCATAATCAAGAAATAATCAGTCTTGATGCTGGATCTGTTGTTTCTGTTCCAGTTGAACATGATCAGGGCCTTTCAGTGTGTGCTAATGTGGATGAAAATGCCCCTGTCCAAAGTGTAGCATTTGGCTCTACTGGGAGTGGTGAGAGTCTATCTTCACATCAGCTGGCCAGTTTAGACTCCTGTACTGATAATTCTCTCTCCCTGAACTCTAATAATCTTACAAGCATTTGTATTTCTGAGGGCAACGATCTTGCAGTATCCACTGGCATTGCTATTGTGAATGATAGGAATGATTGTGCTGCTAAAACACCAAAAGATTCAACTATTCCATCTAGCTCTCAGGCTGAGAGGCAGGAGGCTGCTCCTCCACATGTGGCTTTCTCAGAGAATTCTATGTATGATTCTATGGATGTTCAGAAAGAAGATGCTGAGGATCCTGGGAGAAAACTCAGTTTATCTGAGGGTGTGCATGTCCACAAGGGTATGATTAGCTTGGAGACAGGTGAGGTACGAACTGTTGGTGATATTTTAGAGAATGCTGTCTGTAAATCAGATGAGGTGAGCTTCTCCCAATCTTCTCCAACATGTGCAGAGATGCCCAGTTCTGAAGCACTTCTTGGAGGTCAACCTGTGGTAGCAGAGGATGCTAAAGAGCAACATGGAAAAGTTTCTGTGGATGGTACTGATGCAAATGATACTCAAGTACATATTGACACGAGGGAGCTGACCAAATGTTCAGGAAAATCTGCTGAACTTTTAGGTGCATCCTCTGGTCTTAGCAGTCATAGTGAGTGCATAAGTGCTTCCAATGATCTTATGGATCATCCTGATAAGATGGCTGGCAGTGGCTATGATTCTGATGTTTCTCAAGATGATCCTGATCCTGTAGTTAGGATTGAAAAGGCAAGTGAGCTTCAGATGGATTATGATTCTCAGTATGAAGATGGAGAACTAAGGGAATCGATTGAATACACTTGGGAAGACCTTGGTGGGGAGGATGGCGAAGGTGAACATGTGGATTATGGGTCAGATAACAGAGACATGGCTGGCTTTGGTGCTTCAGATTACCATGTCATGTTGGTTAAAGTTGAGGGAGCAGAATGCAAGAGACAGAGAGTTTCTAACAATAAGAATTTGGGTTCTGAACCTGAACAATCTTGTCTTGGAAGCTCATCGATGACAAAAGTCGTAGAGGCAGTATCTGGTAAGGATGATGGTGCAAAATGTAGTTCACCATGCTTGAGCACACGGTTTTCAGGCAAAGATGATATTGATCAGTTTGATGCAAGTGCTGAGGTCAACAAAGAAACTGGTGCCAGACCTGATAATGTGAGTGGGGACCATGAGATTCATGTCATGGAAGCTGATGCAGAGGAAGCAAGCCAAGATGATGATTTGAAAATGAAAATTTCTGGATGGGATCTGTTGCCAGAGAATTGCAAAAGTTCTTCAGATATAGCGATGGAGCTTGGAGATGGCAGTGGTAGGAAGAATATTTCTGGTGATTCTGTAGATGGATTGAATACTGAAGATACTGAGACAAGGATGGTTAAGTCAAGAACATTCAAGAGGGAGTTGTTGTCACGTATTGAAGGACCGGTGTCTGGTGATGTGTTCTTAGGAAAGCATAGACTATGCACACAGGGAAGCAGATCCAATGATGCTGATGATTCAAATTCCAGATCTGAAAGAGAGTCTGGCTCTGTGAAATCCTTTGGAAGGAGTAGTTACTCTCTGCACATTCACTCTAGAGGTCGGGGAAGTGAGCATTGGGCTGATTATCCAGATGGCCACAGGGCCCCAAGACGACATCATTCATCTGGTTATCGCAGCATTACTGGGTTTAGTTTCCCAGGGCCAGAAAATGCTGCAGCCGTGTTCACTAGCAGACAAAGCACGAGTGTTTCATCACATGGTGTGCGTCGAGCTCTTAGAAGAAGTGGATCGCCAGCTGAAGGGGATGAGGCTTTTGGTATGCGTCTGGGTCTTAGACCAGCAGGAGAGATTAGCCCTGATAGGCATATGGGTATTGGCAGGGAAAGGTCTTTAAGATATGGTCCACGGCTTGATGATAGAGGCCCTAGGGGAAGGTATGATGGGCATGTGCTTGATGGCTGCATTGAATCTTCCTTGAATTATTCACATCCTTTAGCTAAGAGAGAAAGAAGTTTTTCTCCCATTGAAAGAAGAGGGGATCCTTCTGCACGTCAGTCCCACACAAAATCTCCATCTAGATCCAGAAGTCGCTCCCCCAATACTTGGCAATCTCCAAGGGGAAGAAATGGGGCTGGTGTTGTAGGAAATCCCTGTCTTAGACACCGAAGCAGGTCTCCTAGTTTCCGGTCTGGAGCCCGAGTGCAAAGAATAAGATCCCCTCATCAACGGTCTGGTTTTGCATCAGATCATATGGTAGGATTCATGTCAATGCCACGAAATCATGGTTCCCCACCACATAATTCTAGATGGATTGGTGATAGGAAGGATGGGATGGTTCACTTTAGGGAGCATGGTTAA 3729 44.17 MLSTVGLELTSLINSDLTWKKASKGRSASRRARKPVARCSKAGGELVNKDPKRVAMPVSESEKLGVSVLGCRFSEKAEHIPIKKRRFLFRSPSPPSKNSSPRSEETTDDAAAASGTDLGKIVDTELDCDRKNLVKVNEFPGANEDFSGISILAAAACSSSMGGEDGFEEGVSRDGESSAHEGPLDVLVNNELCSLSKGFPMEDLVSSAKVSTEEAGSCSSPVPEKELAASSRTENSLLKCQAHGQNMEGTSFPDSHVTVSQDLLRNKDDETARTHESSLRDDRSHWDLNTAMDAWERPFEYQCCDPQFNVGDSISEDVDDGKTSDKMEKSEGCELERESGGTNGKILLPSDSSGLAQTQELNIEEHGSDSDSGINESICLQEKFVSSSEIINASKTDLPQELESLHNQEIISLDAGSVVSVPVEHDQGLSVCANVDENAPVQSVAFGSTGSGESLSSHQLASLDSCTDNSLSLNSNNLTSICISEGNDLAVSTGIAIVNDRNDCAAKTPKDSTIPSSSQAERQEAAPPHVAFSENSMYDSMDVQKEDAEDPGRKLSLSEGVHVHKGMISLETGEVRTVGDILENAVCKSDEVSFSQSSPTCAEMPSSEALLGGQPVVAEDAKEQHGKVSVDGTDANDTQVHIDTRELTKCSGKSAELLGASSGLSSHSECISASNDLMDHPDKMAGSGYDSDVSQDDPDPVVRIEKASELQMDYDSQYEDGELRESIEYTWEDLGGEDGEGEHVDYGSDNRDMAGFGASDYHVMLVKVEGAECKRQRVSNNKNLGSEPEQSCLGSSSMTKVVEAVSGKDDGAKCSSPCLSTRFSGKDDIDQFDASAEVNKETGARPDNVSGDHEIHVMEADAEEASQDDDLKMKISGWDLLPENCKSSSDIAMELGDGSGRKNISGDSVDGLNTEDTETRMVKSRTFKRELLSRIEGPVSGDVFLGKHRLCTQGSRSNDADDSNSRSERESGSVKSFGRSSYSLHIHSRGRGSEHWADYPDGHRAPRRHHSSGYRSITGFSFPGPENAAAVFTSRQSTSVSSHGVRRALRRSGSPAEGDEAFGMRLGLRPAGEISPDRHMGIGRERSLRYGPRLDDRGPRGRYDGHVLDGCIESSLNYSHPLAKRERSFSPIERRGDPSARQSHTKSPSRSRSRSPNTWQSPRGRNGAGVVGNPCLRHRSRSPSFRSGARVQRIRSPHQRSGFASDHMVGFMSMPRNHGSPPHNSRWIGDRKDGMVHFREHG* 1243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 308881 315609 + Vvi2g23 Vvi2g23 782722

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g23 1242 MobiDBLite consensus disorder prediction 310 346 - -
Vvi2g23 1242 MobiDBLite consensus disorder prediction 505 535 - -
Vvi2g23 1242 PANTHER - 1 1242 - -
Vvi2g23 1242 MobiDBLite consensus disorder prediction 86 116 - -
Vvi2g23 1242 MobiDBLite consensus disorder prediction 1070 1101 - -
Vvi2g23 1242 MobiDBLite consensus disorder prediction 891 917 - -
Vvi2g23 1242 MobiDBLite consensus disorder prediction 1126 1141 - -
Vvi2g23 1242 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN 1 1242 - -
Vvi2g23 1242 MobiDBLite consensus disorder prediction 163 182 - -
Vvi2g23 1242 MobiDBLite consensus disorder prediction 509 523 - -
Vvi2g23 1242 MobiDBLite consensus disorder prediction 1142 1164 - -
Vvi2g23 1242 MobiDBLite consensus disorder prediction 1122 1230 - -
Vvi2g23 1242 MobiDBLite consensus disorder prediction 988 1007 - -
Vvi2g23 1242 MobiDBLite consensus disorder prediction 1078 1101 - -
Vvi2g23 1242 MobiDBLite consensus disorder prediction 92 110 - -
Vvi2g23 1242 MobiDBLite consensus disorder prediction 315 338 - -
Vvi2g23 1242 MobiDBLite consensus disorder prediction 952 1012 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g23 - - - vvi:104881089 2364.34
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g23 Vvi16g744 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g23 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020799 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 4