Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g231 ATGGAAACTGAACTGAAAGAGATAGAGAAGGAGGACAAGGAGGTACAGTCGGAAAAAGCTGAGGAGACGAAGAGGTTACCTCCATGGACAAAGCAGATAACTGTAAGGGGAGTCATTGCCAGCATTGTGATAGGGAGCATGTACAGTGTGATAGCCATGAAGCTGAACCTCACAGTTGGGCTTACTCCTAATCTCAACATCTCTGCCGCCCTTCTCGCCTTTGTGTTCATCCGGACATGGACAAAGCTGCTCCACAAGACCGGTTTCGTGACAACCCCATTCACCCGCCAGGAGAATACCATGATCCAGACATGTTCAGTTGCATGCTATAGCATTGCTGTTGGAGGTGGTTTTGGGTCTTATCTTGTGGGGTTGAATAGGAAGACGTATGAGCTGGCGGGGATCAACACAGAAGGAAACTCTCCAACTAGTATCAAGGAGCCGGGGCTTGGCTGGATGATTGGCTTCCTCTTTCTAGTTTGTTTTGTTGGCCTTTTTGTCCTGATTCCTCTCAGAAAGGTCATGATAATCGACTACAGATTAACATATCCAAGTGGGACAGCAACTGCAGTTCTCATCAATGGTTTCCATAGCCAGGGCGATAAGTTGGCGAAGAAGCAGGTTCGTGGGTTTATGAAGTTCTTCTCAATGAGTTTTCTTTGGGGGTTTTTCCAATGGTTTTACACAGGGAAAGAGGAATGTGGATTTGCTCAGTTCCCTACTTTCGGATTGCAAGCTTGGAAGCAAACGTTCTACTTCAATTTCAGCATGACTTATGTGGGAACTGGGATGATCTGTTCCCACCTTGTGAACTTGTCTTTGCTTCTTGGAGCTGTGCTCTCTTGGGGGCTAATGTGGCCACTCATCGGTAGTCTCAAGGGCGAGTGGTTTCCAAGGAATTTGCCAGACAGCAGTATGAAGAGTCTAAATGGTTATAAGGTTTTTATCTCGGTTTCTCTCATCCTAGGTGATGGACTCTACAATTTCGTCAAAGTACTGTATTTTTCGATCACAAGTATCTACGGTAGACTGAAGCGCCAGCGCCAGAACCTCAAAATAGATGGAGATGAGCAGACTAAGACACTGGATGATCTAAAACAAGACGAAGTTTTCATTAGAGAATCCATTCCCCTGTGGATGGCAGTCACTGGATACATTATCTTCGCCGTTCTTTCAATAATTGTGATTCCACTCATGTTCCCTCAGATCAAATGGTACTTTGTTCTCGTAGCCTACGTCATTGCTCCATCTCTAGCCTTCTGCAACGCTTATGGAGCTGGTCTAACTGACATCAACATGGCATATAATTACGGGAAGGTGGCGCTGTTTATGCTGGCTGCATTGTCTGGGAAAGAGAATGGAGTGGTAGCGGCGTTGGCAGGGTGCGGTATCATCAAATCTGTTGTTTCTGTTGCTTGCATCCTGATGCAAGATTTCAAAACAAGCTATTTCACCATGGCATCTCCACGAGCAATGTTCTTGAGCCAGGCCATTGGCACAGCGATAGGCTGCATCACGGCTCCTCTGAGTTTCTTCCTGTTCTATAGGGCGTTTGATGTGGGAAACCCGAACGGAGAATACAAGGTTCCTTATGCTCTAATCTATAGAAACATGGCGATCCTGGGGGTTGAAGGGGTGGCTGCTTTGCCACAGCATTGCTTGCAGCTCTGCTATGGCTTCTTCGCCTTTGCAGTAGTAGTTAACATGGCTAAAGATCTTTGCCCGCCTAAGATCGGGAAATGGATGCCACTTCCGATGTGCATGGCTGTGCCGTTTCTAGTTGGGGCATACTTTGCGATTGATATGTGTTTAGGGACTTTGATTGTGTTTCTGTGGCACAAGCTTGACACCAAGAAGGCTGAGTTGATGGTCCCGGCGGTCGCTTCTGGTTTGATTTGTGGAGAAGGGATGTGGACTCTTCCGGCATCAGTGCTGGCTCTGGCCAAGATCAGCCCTCCAATCTGCATGAAGTTCTTGGAATTTGTAATTGTTTCGATACACAGGTTGAAGAAGACGACCGAGCCCCAATTCAATGGATGA 2040 46.86 METELKEIEKEDKEVQSEKAEETKRLPPWTKQITVRGVIASIVIGSMYSVIAMKLNLTVGLTPNLNISAALLAFVFIRTWTKLLHKTGFVTTPFTRQENTMIQTCSVACYSIAVGGGFGSYLVGLNRKTYELAGINTEGNSPTSIKEPGLGWMIGFLFLVCFVGLFVLIPLRKVMIIDYRLTYPSGTATAVLINGFHSQGDKLAKKQVRGFMKFFSMSFLWGFFQWFYTGKEECGFAQFPTFGLQAWKQTFYFNFSMTYVGTGMICSHLVNLSLLLGAVLSWGLMWPLIGSLKGEWFPRNLPDSSMKSLNGYKVFISVSLILGDGLYNFVKVLYFSITSIYGRLKRQRQNLKIDGDEQTKTLDDLKQDEVFIRESIPLWMAVTGYIIFAVLSIIVIPLMFPQIKWYFVLVAYVIAPSLAFCNAYGAGLTDINMAYNYGKVALFMLAALSGKENGVVAALAGCGIIKSVVSVACILMQDFKTSYFTMASPRAMFLSQAIGTAIGCITAPLSFFLFYRAFDVGNPNGEYKVPYALIYRNMAILGVEGVAALPQHCLQLCYGFFAFAVVVNMAKDLCPPKIGKWMPLPMCMAVPFLVGAYFAIDMCLGTLIVFLWHKLDTKKAELMVPAVASGLICGEGMWTLPASVLALAKISPPICMKFLEFVIVSIHRLKKTTEPQFNG* 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2172172 2178520 + Vvi2g231 Vvi2g231 782930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g231 679 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 6 660 IPR045035 GO:0035673
Vvi2g231 679 Coils Coil 1 25 - -
Vvi2g231 679 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL1 6 660 - -
Vvi2g231 679 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 28 644 IPR004813 GO:0035673
Vvi2g231 679 Pfam OPT oligopeptide transporter protein 32 645 IPR004813 GO:0035673
Vvi2g231 679 Coils Coil 348 368 - -
Vvi2g231 679 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g231 - - - vvi:100233121 1305.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g231 Vvi16g993 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g231 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0553 Cone12ag0552 . . . Csa05g00170 Chy09g01328 . Blo03g00808 . Bda07g00148 . . Bpe11g00365 . . . . . . . . . . . Bhi12g00092 . . . . . Lcy12g1527 . . . . . . . Lsi09g00142 . . Cme09g01875
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000598 4 9 3 3 2 3 3 3 3 4 3 3 3 4 4 3 3 3 3 3 4 2 2 2 2 4 2 4 10 3 104