Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g232 ATGATCCAGACATGTTCAGTCGCATGTTATAGCATTGCTGTTGGAGGGGGGTTCGGGTCTTATCTTCTGGGGTTGAACAGGAAGACGTATGAGCAGGCGGGGATCGACACAGAAGGGAACTCACCAACTAGTATCAAGGATCCTGGGTTTGGCTGGATGACTGGCTTCCTTTTTCTAGTTTGTTTTGTTGGCCTTTTTGTCTTAATTCCTCTCAGAAAGGTCATGATAATTGACTACAGATTGACGTATCCAAGTGGTACAGCAACTGCAGTTCTCATCAATGGTTTGCATAGCCAAGATGATAAGCTGGCAAAGAAGCAGGTTCGGGGGTTCATGAAGTACTTCTCCATGAGTTTATTTTGGGGGTTTTTCCAGTGGTTTTACTCAGGGAAAGATGAATGTGGATTTTCGCAGTTCCCTAGTTTTGGATTGCAAGCTTGGAAGCAAACGTTCTACTTCAATTTCAGCATGACTTATGTGGGAGCAGGGATGATCTGTTCCCACCTTGTGAACTTGTCTTTGCTTCTTGGTGCTGTGCTGTCTTGGGGGCTAATGTGGCCTCTCATCGGTAATCTTAAAGGCGAGTGGTTCCCCAAGAATTTGCCAGACAGCAGTATGAAGAGTCTAAATGGTTATAAGGTTTTTATCTCAGTTTCTCTCATCTTAGGTGATGGACTCTACAATTTCGTCAAGGTTGTGTTTTTTTCGATCACAAGTATCTACGGTAGACTGAAGCACCAACACCAACGCCAGCGCCAGAACCTCAAAATAGATGTAGATGGGCAGAGCAAGGTAATTGATGATCTAAAACAAGATGAAGTTTTCATCAGAGAAAACATTCCCCTCTGGATAGGGGTCACTGGATACATCGTCTTTGCCATTGTTTCTGTAACCGTGCTTCCAATCATGTTTCCGCAGCTAAAATGGTACTTTGTTCTTGTAGCCTACATCATGGCTCCATCTCTAGCATTCTGTAACGCGTATGGAACAGGTCTAACAGACATCAACATGGCATATAATTACGGGAAGGTGGCACTGTTTATGCTGGCTGCATTGTCCGGCAAAGAGAATGGAGTGGTGGCAGCGCTGGCAGGGTGTGGTATCATCAAATCCGTCGCTTCAGTTTCTTGCAATCTGATGCAAGATTTCAAAACGAGCTATTTCACTATGGCATCTCCTCGTGCAATGTTCTTGAGCCAGGCCATCGGCACAGCGATAGGCTGCATCACGGCTCCTCTCAGTTTCTTCCTGTTCTACAGGGCGTTTGATGTGGGAAACCCAAAAGGAGAATACAAAGCTCCTTATGCGCTAATATATAGAAACATGGCGATCCTAGGGGTTGAGGGTGTGGCAGCTTTGCCACAGCATTGCTTGCAGCTCTGCTACAGCTTCTTTGCCTTTGCGGTAGTAGTTAATATGGTTAAAGATCTTTGCCCGCCTAAGATCGGGAGATGGATGCCCCTTCCGATGTGCATGGCAGTGCCATTTCTAGTCGGGGCATACTTCGCTATAGACATGTGCTTAGGGACTTTGGTTGTGTTTCTGTGGCACAAGCTCGACACCAATAAGGCTGAGTCAATGGTTCCCGCCGTGGCTTCTGGTTTGATTTGTGGAGAAGGGCTGTGGATCCGGCATCAATACTTGCTTTAG 1650 46.12 MIQTCSVACYSIAVGGGFGSYLLGLNRKTYEQAGIDTEGNSPTSIKDPGFGWMTGFLFLVCFVGLFVLIPLRKVMIIDYRLTYPSGTATAVLINGLHSQDDKLAKKQVRGFMKYFSMSLFWGFFQWFYSGKDECGFSQFPSFGLQAWKQTFYFNFSMTYVGAGMICSHLVNLSLLLGAVLSWGLMWPLIGNLKGEWFPKNLPDSSMKSLNGYKVFISVSLILGDGLYNFVKVVFFSITSIYGRLKHQHQRQRQNLKIDVDGQSKVIDDLKQDEVFIRENIPLWIGVTGYIVFAIVSVTVLPIMFPQLKWYFVLVAYIMAPSLAFCNAYGTGLTDINMAYNYGKVALFMLAALSGKENGVVAALAGCGIIKSVASVSCNLMQDFKTSYFTMASPRAMFLSQAIGTAIGCITAPLSFFLFYRAFDVGNPKGEYKAPYALIYRNMAILGVEGVAALPQHCLQLCYSFFAFAVVVNMVKDLCPPKIGRWMPLPMCMAVPFLVGAYFAIDMCLGTLVVFLWHKLDTNKAESMVPAVASGLICGEGLWIRHQYLL* 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2178574 2181567 + Vvi2g232 Vvi2g232 782931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g232 549 Pfam OPT oligopeptide transporter protein 1 543 IPR004813 GO:0035673
Vvi2g232 549 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 1 542 IPR004813 GO:0035673
Vvi2g232 549 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL1 1 548 - -
Vvi2g232 549 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 1 548 IPR045035 GO:0035673
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g232 - - - vvi:100259860 1091.64
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g232 Vvi16g993 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g232 . . . . . . . Bma14g00105 . . Cma02g00941 . Car02g00689 . . . Cpe05g00773 . . . . . . . . . . . . . . . . . . . Csa05g00169 Chy09g01329 . . . Bda07g01951 . . . . . . Cmo02g00950 . . . . . . . Bhi12g00091 . . Lac11g1930 Hepe06g1441 . . Cla01g00150 Cam01g0155 Cec01g0151 Cco01g0157 Clacu01g0150 Cmu01g0150 Cre09g2356 Lsi09g00141 . . Cme09g01876
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000598 4 9 3 3 2 3 3 3 3 4 3 3 3 4 4 3 3 3 3 3 4 2 2 2 2 4 2 4 10 3 104