Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g233 ATGAGAGAACTGTTGAGTGAATTGAAGGATGGTGAAGGAAACTCTGCTGCCCGAGAGGGCGAGACGCATGATGCGAGTCATCATTACAGTTCAGAAAGCACACAACAGCAACATCATATCGACCATAATGATCCTGCCATGGACTTGATCAATAGTGTCACAGGTGTTGATGAGGAGGGCAGGTCTCGCCAACGAATTCTTGCATTTGCTGCCAGAAGGTATGCTAGTGCAATAGAGAGAAATTCGGAAGACTATGATGCACTTTACAATTGGGCGTTGGTTCTCCAGGAAAGTGCAGATAATGTGGGTCCTGATTCTAGTTCACCTTCTAAAGATGCATTGCTTGAGGAGGCTTGTAAAAAATATGATGAGGCCACCCGTCTTTGCCCCACACTTCATGATGCTTTTTATAATTGGGCTATAGCAATATCTGATCGGGCAAAAATGCGGGGTCGTACTAAGGAGGCTGAAGAATTATGGAAGCAGGCAACTAGAAACTATGAAAAAGCTGTTCAACTCAATTGGAACAGTCCCCAGGCACTAAACAATTGGGGACTTGCTCTCCAGGAACTCAGTGCTATTGTTCCTGTGCGAGAAAAGCAGACGATTGTAAGAACAGCAATTAGCAAGTTCCGAGCAGCAATACAGTTGCAATTTGATTTCCATAGAGCAATTTACAACCTTGGTACTGTTCTGTACGGATTAGCAGAGGATACATTAAGGGCTGGGGCGATAGTAGATAAAGAAGTTTCCCCTAATGAGTTGTATAGCCAATCTGCTATCTACATTGCAGCTGCTCATGCATTGAAACCAAATTACTCAGTTTATCGTAGTGCCTTAAGACTTGTGCGATCCATGCTCCCATTGCCCTATCTCAAGGTTGGATATCTCGCTGCACCACCTGCGGGGAATCCAGTTGCACCTCATGGTGACTGGAAACGTACACAGTTTGTTTTGAACCATGAAGGGCTTCAACAGCTCAACAAGGTTGAGCAAAAACAGACACCGCAAACTCTTTCTGGCAGGTCAGGAGATGCAGTTCATATTGATAAAGCAGCCATCAAAGTCGATGTTCCAGATATTGTTTCTGTATCAGCATGTGCTGATCTGACTTTACCAGCAGGTGCAGGCCTCTGCATTGATACAATTCATGGACCAGTTTTCTTGGTTGCTGATTCATGGGAATCCTTGGATGGATGGTTTGATGCAATTCGTTTAGTTTACACAATTTTTGCTCGAGGTAAAAGCGATGTGTTGGCAGGTATTATAACTGGCTGA 1278 44.29 MRELLSELKDGEGNSAAREGETHDASHHYSSESTQQQHHIDHNDPAMDLINSVTGVDEEGRSRQRILAFAARRYASAIERNSEDYDALYNWALVLQESADNVGPDSSSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATRNYEKAVQLNWNSPQALNNWGLALQELSAIVPVREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRAGAIVDKEVSPNELYSQSAIYIAAAHALKPNYSVYRSALRLVRSMLPLPYLKVGYLAAPPAGNPVAPHGDWKRTQFVLNHEGLQQLNKVEQKQTPQTLSGRSGDAVHIDKAAIKVDVPDIVSVSACADLTLPAGAGLCIDTIHGPVFLVADSWESLDGWFDAIRLVYTIFARGKSDVLAGIITG* 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2182863 2194766 - Vvi2g233 Vvi2g233 782932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g233 425 MobiDBLite consensus disorder prediction 1 40 - -
Vvi2g233 425 Gene3D Tetratricopeptide repeat domain 56 175 IPR011990 GO:0005515
Vvi2g233 425 Gene3D Tetratricopeptide repeat domain 176 290 IPR011990 GO:0005515
Vvi2g233 425 PANTHER PROTEIN HLB1 1 425 - -
Vvi2g233 425 PANTHER - 1 425 - -
Vvi2g233 425 Pfam Plant specific mitochondrial import receptor subunit TOM20 71 173 - -
Vvi2g233 425 Pfam Plant specific mitochondrial import receptor subunit TOM20 179 281 - -
Vvi2g233 425 SUPERFAMILY TPR-like 150 282 IPR011990 GO:0005515
Vvi2g233 425 SUPERFAMILY TPR-like 70 191 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g233 - - - vvi:100232876 851.662
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g233 . . . . . . . . Cmo06g00591 Cmo16g01275 . . . . . Cpe14g01015 . . . . . . . . Cla10g00086 Cam10g0085 Cec10g0089 Cco10g0091 Clacu10g0086 Cmu10g0933 Cre10g0347 Cone8ag0554 Cone12ag0553 . . Lsi07g01112 . . Cme06g02392 . . . . . . . Bma12g00254 . . . Cma06g00588 . Car06g00520 Car16g01157 Cpe08g00914 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009993 1 0 0 2 1 1 2 1 1 1 0 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33