Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g234 ATGCTCACACAACAGAAACCCTTTATGAGAGCCCTCCGGCGAAGTATCACTTCTTCACCGTCATCATCGTCAAATTCTTCTTCACCGTCATCCTCGTCATCGTCATCGTGGATTCATTTGCGAACGGTTCTCTTAGTCGTTGCTTCCTCCTCACCAGTCTCCACTGATAGAGGCACTCTTAAATCACCATGGTCTCGCCGGAGAAGAAAACATGCCCTCCTGGCCAAACAATGGAAGAGTCTTTTTACGCCAGATGGAAAATTCACTGATGGTGGAGTTAAGTTTCTGAAGAAAGTTAGAAGCGGAGGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGTCTATGATGTGAAGAGTTCCAGGGAAGAGAGAGATTCTATTAGGGCTCAGAAGAGAAAGGAATATGAGAACCTGCGGAAACAGTGCCGACGAATCCTAAAACAGAGTGACACTAGCATTAAGTTGAGGGAAACTACTGGAAGCTGTAGCAACCAGGATAGTGAGGAATTCAGTCAAGTTTTAGATTCTTCTGGCTCAGAAGATGTGGTTAGTGCCAGGTTGTCTCATTCCACCGAGGGAGGGACTCCAGAGGAAGAGGATTCAGTCCACCCAAGTGGACTTACCTGTGAAGATGCCTCTGCTAATTTTGCAACATGGCAGAGGATCATCCGCCTTGATGCTGTGCGAGCGAATGCTGAATGGATCATTTATTCACCATCTCAGGCTGCTGTGTCAGAGATCAAGGCACGGAGATTTGCAGAGAGTGTTGGATTGAAGGATTATGATCACCTGGAGCCATGCAGGATTTTCCATGCTGCTCGCTTAGTTGCCATTCTAGAAGCCTATGCACTCTATGATTCAGAAATTGGTTACTGCCAAGGGATGAGTGATTTACTCTCCCCGATAATTTCGGTGATGGAGGAGGACCATGATGCCTTCTGGTGCTTTGTAGGTTATATGAAGAAAGCTCGGCATAACTTCCGGCTTGATGAGGTGGGGATTCGAAGACAACTGAGCATCGTGTCCAAGATTATTAAGCTGCAAAGGAAGCTGATCATAGAGAAGTACAGCAGTATGGATGAGATCATAAGGGAGTGCAACAGCATGGCAGGACATCTCGATGTTTGGAAGCTTCTAGATGATGCCCATGATTTGGTGGTGACCCTCCATGACAAAGTTTAG 1197 46.53 MLTQQKPFMRALRRSITSSPSSSSNSSSPSSSSSSSWIHLRTVLLVVASSSPVSTDRGTLKSPWSRRRRKHALLAKQWKSLFTPDGKFTDGGVKFLKKVRSGGVDPSIRVEVWPFLLGVYDVKSSREERDSIRAQKRKEYENLRKQCRRILKQSDTSIKLRETTGSCSNQDSEEFSQVLDSSGSEDVVSARLSHSTEGGTPEEEDSVHPSGLTCEDASANFATWQRIIRLDAVRANAEWIIYSPSQAAVSEIKARRFAESVGLKDYDHLEPCRIFHAARLVAILEAYALYDSEIGYCQGMSDLLSPIISVMEEDHDAFWCFVGYMKKARHNFRLDEVGIRRQLSIVSKIIKLQRKLIIEKYSSMDEIIRECNSMAGHLDVWKLLDDAHDLVVTLHDKV* 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2196015 2200712 - Vvi2g234 Vvi2g234 782933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g234 398 MobiDBLite consensus disorder prediction 161 196 - -
Vvi2g234 398 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 209 332 - -
Vvi2g234 398 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 78 352 IPR035969 -
Vvi2g234 398 MobiDBLite consensus disorder prediction 161 210 - -
Vvi2g234 398 Pfam Rab-GTPase-TBC domain 279 355 IPR000195 -
Vvi2g234 398 SMART tbc_4 100 389 IPR000195 -
Vvi2g234 398 ProSiteProfiles TBC/rab GAP domain profile. 103 398 IPR000195 -
Vvi2g234 398 PANTHER SMALL G PROTEIN SIGNALING MODULATOR 2-LIKE ISOFORM X1 353 398 - -
Vvi2g234 398 PANTHER SMALL G PROTEIN SIGNALING MODULATOR 2-LIKE ISOFORM X1 204 350 - -
Vvi2g234 398 PANTHER SMALL G PROTEIN SIGNALING MODULATOR 2-LIKE ISOFORM X1 23 167 - -
Vvi2g234 398 MobiDBLite consensus disorder prediction 1 34 - -
Vvi2g234 398 Coils Coil 133 153 - -
Vvi2g234 398 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 204 350 - -
Vvi2g234 398 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 23 167 - -
Vvi2g234 398 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 353 398 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g234 - - - vvi:100265048 622.854
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g234 Vvi16g990 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g234 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g01953 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001494 2 4 2 1 1 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 3 2 72