Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g237 ATGCTTGATGGTGGTCAACGGCGGTACGATCCGTCGCTGGAGGTGCTTGGAGGAGGTCTGGATTCATACCTCCCGGCATTCAAAACCCTGAACCGTCCGTATGACGCGTTTCCTGTGGTTGGATGGAATCGGCACGTGGAGACGATCTTCGCATCGTTTTTCCGGTCTGTTCCTGACGTCAGATTGCGGCGGGAGTGTCTGAGGACGAAGGACGACGGCGCTGTCGCTCTCGATTGGGTTTCCGGTGACGACCGTCGGCTTGGAGCCGACTCCCCGGTTCTCATTCTACTGCCAGGTCTAACAGGAGGGAGTGAAGATAGTTATGTGAGGCATTTGCTGGTCAGAGCAAGAAGCAATGGAATGCGAGTAGTTGTGTTCAATAGCCGTGGCTGTGCAGATAGCCCCGTGACCACGGCTCAGTTCTATTCAGCTTCATTTACAGAAGATTTGCGTCAAGTAGTGGCACATGTTTCAAATCGCTACCCAAATGCAAATTTATATGCTGTTGGTTGGTCTCTTGGGGCTAATATTCTTGTTCGGTATTTGGGCCAGGAATCCCATGCTTGTCCTCTGTCTGGTGCTGTGTCTTTGTGTAATCCTTTCAATTTGGTTATAGCAGATGAGGACTTCCGTAAAGGTTTTAACATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAAGCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGCTGCCAATGCCAAATCTGTTAGGGAGTTTGATGATGGATTAACTCGAGTTTCATTTGGATTCAAGTCAGTGGATGACTACTACTCTAATTCAAGCAGTTCAGATTCCATAAAACATGTGTGCACACCTTTGCTTTGCATCCAGGCTGCAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATCAAGGAAAACCCAAACTGTTTGTTGATAGTTACACCTAAAGGCGGCCACCTAGGGTGGGTTTCAGGGCCTGAAGCTCCCCGTGGAGCTCCTTGGACTGATCCTGTAGTGATGGACTTCCTCGAGCATCTGGAGAGAGGAAGACCCAAAGTTATTGCATCTTCTAGTGAATCAGATACAGTCCAGCTCTGTACAGAAGGCTTGCGCCACCTGAAGTGTGGGTAA 1161 47.72 MLDGGQRRYDPSLEVLGGGLDSYLPAFKTLNRPYDAFPVVGWNRHVETIFASFFRSVPDVRLRRECLRTKDDGAVALDWVSGDDRRLGADSPVLILLPGLTGGSEDSYVRHLLVRARSNGMRVVVFNSRGCADSPVTTAQFYSASFTEDLRQVVAHVSNRYPNANLYAVGWSLGANILVRYLGQESHACPLSGAVSLCNPFNLVIADEDFRKGFNIVYDKTLANALRKIFKKHILIFEDIGGEFNIPLAANAKSVREFDDGLTRVSFGFKSVDDYYSNSSSSDSIKHVCTPLLCIQAANDPIAPSRGIPREDIKENPNCLLIVTPKGGHLGWVSGPEAPRGAPWTDPVVMDFLEHLERGRPKVIASSSESDTVQLCTEGLRHLKCG* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2206313 2212270 + Vvi2g237 Vvi2g237 782936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g237 386 PANTHER ABHYDROLASE DOMAIN-CONTAINING PROTEIN 9 383 - -
Vvi2g237 386 PANTHER EMBRYOGENESIS-ASSOCIATED PROTEIN EMB8-LIKE 9 383 - -
Vvi2g237 386 PIRSF Ab_hydro_YheT 12 374 IPR012020 -
Vvi2g237 386 ProSitePatterns Uncharacterized protein family UPF0017 signature. 259 300 IPR000952 -
Vvi2g237 386 SUPERFAMILY alpha/beta-Hydrolases 56 340 IPR029058 -
Vvi2g237 386 Gene3D alpha/beta hydrolase 77 354 IPR029058 -
Vvi2g237 386 Pfam alpha/beta hydrolase fold 92 330 IPR000073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g237 - - - vvi:100249542 777.704
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g237 . . . . . . . . . . Cma02g00942 . Car02g00690 . . . Cpe05g00772 . . . . . . . . . . . . . . Cone8ag0597 Cone12ag0591 . . . Csa05g00167 Chy09g01331 . . . . Bda09g00645 Bpe08g00896 . . . . . . . . . . . . Bhi12g00089 . . Lac11g1928 Hepe06g1439 . Lcy12g1523 Cla01g00148 Cam01g0153 Cec01g0149 Cco01g0155 Clacu01g0148 Cmu01g0148 Cre09g2358 Lsi09g00139 . . Cme09g01879
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010186 1 1 0 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32