Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g24 ATGAAGTCCCTGACTCGGAATTTTCTCCAACACTCCAAAGCGTCAATGGCCACATTTTATCTTACACTTAATCCAGCCTCGTTTCTTGCAGTTTCTAGCCAGAAAAGGTTGAGTTCAAACTCCATCCAATGCTGCCAGGACACCAATGGACAGCCAAGACCTAGAGTGACCCATGAACCTTCAGATAACTGGTTGACCAGTTTCCCAGAAAAGAATCCTATTATTAGTTCACCTACTGTCCTGCCTCCACGGCCTCGCCGGATAATTCTGGTTCGACATGGACAGAGTGAAGGAAATGTTGATGAAAGTGTCTATACACAGGTCCCTGATCCAAAGATTAAACTCACAGAAAAAGGAATGGCTCAAGCTGAGGAATGTGGAAAGAATATAAGGAAGATGATAGAGAAAGATGGTGTGGATGATTGGAAAGTTTACTTCTATGTGTCACCATATAGGAGAACACTAGAAACATTGAGGTGTTTGGCTCGAGCATTTAAACGCCGAAGGATTGCTGGCTGGAGAGAAGAGCCTCGTCTACGAGAGCAAGATTTTGGGAATTTTCAAGACAGAGAAAAGATGCGGATAGAAAAAGCTACTCGTGTTCTCTATGGCCGCTTCTTTTACCGATTTCCTAATGGGGAATCTGCAGCCGATGTTTATGATAGAATAACAGGATTTAGAGAAACCCTGAGAGCAGATATTGACATTGGCCGCTTTCAGCCACCTGGGGAAAGGAACCCAAACATGAACTTAGTAATTGTGTCACATGGTCTTACATTGCGGGTGTTCCTGATGAGGTGGTACAAATGGACCGTGGAGCAATTTGAGGGACTTAATAACCTGGGCAATGGAGATATGATTGTCATGGAAAAAGGCTATGGTGGAAGGTACAGCTTATTAATGCACCACACTGAAGAAGAGCTGAGAAACTTTGGACTAACAGAAGAAATGCTGATCGATCAGGAATGGCAAAAGATTGCCAAACCAGGTGAACTGAATTACGATTGCTTGATTACTGGACCATCTTTCTTCACCCACTTTGAGGATGAGGACAACGAAACCTAG 1065 43.66 MKSLTRNFLQHSKASMATFYLTLNPASFLAVSSQKRLSSNSIQCCQDTNGQPRPRVTHEPSDNWLTSFPEKNPIISSPTVLPPRPRRIILVRHGQSEGNVDESVYTQVPDPKIKLTEKGMAQAEECGKNIRKMIEKDGVDDWKVYFYVSPYRRTLETLRCLARAFKRRRIAGWREEPRLREQDFGNFQDREKMRIEKATRVLYGRFFYRFPNGESAADVYDRITGFRETLRADIDIGRFQPPGERNPNMNLVIVSHGLTLRVFLMRWYKWTVEQFEGLNNLGNGDMIVMEKGYGGRYSLLMHHTEEELRNFGLTEEMLIDQEWQKIAKPGELNYDCLITGPSFFTHFEDEDNET* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 317022 321160 - Vvi2g24 Vvi2g24 782723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g24 354 PANTHER BROAD-RANGE ACID PHOSPHATASE DET1 33 348 - -
Vvi2g24 354 Gene3D - 84 321 IPR029033 -
Vvi2g24 354 Pfam Histidine phosphatase superfamily (branch 1) 88 290 IPR013078 -
Vvi2g24 354 CDD HP_PGM_like 87 290 IPR013078 -
Vvi2g24 354 PANTHER OS06G0109000 PROTEIN 33 348 - -
Vvi2g24 354 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 90 99 IPR001345 GO:0003824
Vvi2g24 354 SUPERFAMILY Phosphoglycerate mutase-like 85 296 IPR029033 -
Vvi2g24 354 SMART PGAM_5 87 263 IPR013078 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g24 - - - vvi:100258700 692.189
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g24 . . . . . . . . . . Cma02g01432 . Car02g01200 . . . Cpe05g00354 . . . . . . . . . . . . . . Cone8ag0285 . . . . Csa05g00257 Chy09g01250 . . . . . . . . . . Cmo02g01466 . . . . . . . Bhi12g00293 . . Lac11g2064 Hepe06g1522 . Lcy12g1626 Cla01g00242 Cam01g0247 Cec01g0240 Cco01g0253 Clacu01g0245 Cmu01g0235 . Lsi09g00233 . . Cme09g01785
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013248 0 1 0 0 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27