Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g240 ATGCATGTTTCAGCAGCAAGTATTTTTTGTCTCTCTAATTTTCCTGTTTTTTTTCTTTTTCTTTTTACTTTTGAGGAGTATTTCCCAGCAATGGAGACATCGGAAAATATAGCGACAAGTATCAGGAAGATTAGAAAGAGGAAGTTCAGTGAGGAGCAAATCAGGTCACTGGAGTTCCTATTCGAGTCGGAGGCAAGGCCTGAGGCACAGTTAAAGCAGAAGGTGGCCTCTGAGTTGGGGCTTCACCCTCGTCAGGTTGCCATATGGTTTCAGAACAAGCGGGCTCGATCCAAGTCCAAGCAGATTGAGCAAGACTATGCTGTGCTGAAGGCTAGTTATGATAATCTGGCTTTACAGTTTGAGTCGCTGGAGAAAGAGAATCAGAACTTGGCCATACAGTTGCAGAGACTGAGAGATGGGCTGGAGAAACCTCGTGGGAAGGAAGATGAGGAATCGGAGATCGGGTACACTAATTCGGAAACGAAGGAAAGATACAACCCTGTGCTTCAAGGAAGAATTGAGTACTTTGCTGAAGATACACACACTCCTAAGATGGAAGAACAGACGAATAGTTCCCTGACATCTTCTGCAGATTTAGGAATTTTTAAGTCTAGTTGCTTTCAAGATCAATCGAATTGTAGTTCACAGTGGTGGGAGTTGTGGTCTTGA 669 43.8 MHVSAASIFCLSNFPVFFLFLFTFEEYFPAMETSENIATSIRKIRKRKFSEEQIRSLEFLFESEARPEAQLKQKVASELGLHPRQVAIWFQNKRARSKSKQIEQDYAVLKASYDNLALQFESLEKENQNLAIQLQRLRDGLEKPRGKEDEESEIGYTNSETKERYNPVLQGRIEYFAEDTHTPKMEEQTNSSLTSSADLGIFKSSCFQDQSNCSSQWWELWS* 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2249074 2251461 - Vvi2g240 Vvi2g240 782939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g240 222 SUPERFAMILY Homeodomain-like 35 101 IPR009057 -
Vvi2g240 222 MobiDBLite consensus disorder prediction 141 160 - -
Vvi2g240 222 Coils Coil 220 222 - -
Vvi2g240 222 MobiDBLite consensus disorder prediction 141 158 - -
Vvi2g240 222 Pfam Homeobox associated leucine zipper 100 141 IPR003106 GO:0006355|GO:0043565
Vvi2g240 222 CDD homeodomain 43 101 IPR001356 GO:0003677
Vvi2g240 222 Coils Coil 106 140 - -
Vvi2g240 222 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 25 222 - -
Vvi2g240 222 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 25 222 IPR045224 GO:0003700
Vvi2g240 222 Pfam Homeodomain 45 98 IPR001356 GO:0003677
Vvi2g240 222 SMART HOX_1 43 104 IPR001356 GO:0003677
Vvi2g240 222 ProSiteProfiles 'Homeobox' domain profile. 40 100 IPR001356 GO:0003677
Vvi2g240 222 ProSitePatterns 'Homeobox' domain signature. 75 98 IPR017970 GO:0000981|GO:0006355
Vvi2g240 222 Gene3D - 35 107 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g240 K09338 HD-ZIP; homeobox-leucine zipper protein - vvi:100241028 383.259
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g240 Vvi16g986 ECH
Vvi2g240 Vvi15g640 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g240 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g01954 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001722 2 3 1 3 2 2 3 2 2 1 2 2 3 2 2 3 2 3 0 2 2 2 2 2 2 2 2 5 2 3 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14572 PF00046 Homeodomain 1.70E-15 CL0123 Vvi TF