Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g241 ATGGAGGCTAAAATCTTAGTGTTCATCATACTCCAGCTGGAGCTTTTTTTATTCTCCAATTTGGTGTTGGGTGCCCATTCCAATGGTGGAAGCTGGGAGTTGCTGAAGAAAAGTATTGGGATTTCATCAATGCACATACAATTGTTACAGAATGAGCGAATAATTACTTTTGATAGAACCGATGCCGGTCCTTCCAACCTTACCTTACCAAAGGGAAGGAAATGTCCTAAAATTTCAGGAAGAAGGGATTGCTACGTGCATGCAGTGGAACTGGATATGATGAACAACCTCAATGTTAGACCACTCACTGTGCTGTCTGATACATGGTGTTCTTCCGGCTCATTGTTGCCGGACGGCAAGTTAGTGCAGAGTGGAGGCTATGGGAATGGTGAGAAGGTTGTTCGAACCCTCGAGCCATGCCCAACCTGCGACTGGAAGGAAGATTATAAGGGTCTGATTTCTCCGAGATGGTATGCTTCAAATCAAGTTTTGCCTGGTGGGAATATCATTGTGGTGGGGGGGAGGTTTCAATTCTCATATGAGTTCATCCCTAAAAGCTCTAAACCTGAAGATCATAGACTTTACACCCTTCCATTTCTCAAAGAAACCAGGTATTCATCCCAGATACCCAACAATCTCTACCCATTCACTCACCTCTCAACTGATGGAAATCTCTTTATTTTTGCAAACAACCGGGGGATTCTACTTGACTATGTGAAAAACAAAGTGGTCAAGACTTATCCCACCATGCCTGGAGAAGTTGCTCGGAATTATCCAAGCACTGGTTCCTCAGTTCTTCTTCCCCTCGACCTCTCCACCAAAACCACCCCGGAAGCCGAGGTTTTCATCTGCGGTGGAACGCATCCTGAGTCGTTTAATAAGGCCAAGGCTGGAATATTTCTTGAAGCAACCAAAACTTGCGGCAGACTGAGAATCACAGCCGCGAACCCCAAGTGGGAAATGGAGGAAATGCCCATCAGTCGAGTATTGGGAGACATGATCATGTTGCCAACAGGAGATGTCTTGATCATAAATGGTGCGGCAAATGGAAGCGCTGGTTGGTGGTATGCGAGAGTACCTGTTTACAACCCAGTAATTTATAGGCCAGCAGAAGCAGCTACAGCCAACAGGTTTGAGGTTTTGAAGGCTGCTACGATACCCCGTCTCTATCATTCAACTGCTCATTTGCTTTCAGATGGACGTGTCCTGGTCGCCGGCAGCAACCCCAACCATAATTACAACTTCACAGTACCTTTTCCAACTGAACTGAGTGTTGAAGCCTTTTCTCCACCGTACCTCACTTCAGGGAAGCCCCGGCCCTCCATTTCTTCAGTAAAGCCCGGGATGAACCTTGCTTATAAACAGAAGTTTTCAGTGGAATTTCAAGTGAAGGTGAGACAACTAGGAAAGTTTTACCTAACAATGGTGGCTCCATCTTTTACCACACATTCCTTCTCCATGAACCAGAGACTGTTGCTTTTAGCAGTAAATCGAGTTCGTAGGATGTCTTCTGGAAGCTATGCAGTTGAGGGTGACGCTCCAGCCTCAGCGGCAGTTGCTCCTCCAGGCTACTACCAATTATTTGTAGTCTATGAAGGCGTTCCTAGCGTAGGAAAGTGGGTACATATCAAATAA 1635 45.93 MEAKILVFIILQLELFLFSNLVLGAHSNGGSWELLKKSIGISSMHIQLLQNERIITFDRTDAGPSNLTLPKGRKCPKISGRRDCYVHAVELDMMNNLNVRPLTVLSDTWCSSGSLLPDGKLVQSGGYGNGEKVVRTLEPCPTCDWKEDYKGLISPRWYASNQVLPGGNIIVVGGRFQFSYEFIPKSSKPEDHRLYTLPFLKETRYSSQIPNNLYPFTHLSTDGNLFIFANNRGILLDYVKNKVVKTYPTMPGEVARNYPSTGSSVLLPLDLSTKTTPEAEVFICGGTHPESFNKAKAGIFLEATKTCGRLRITAANPKWEMEEMPISRVLGDMIMLPTGDVLIINGAANGSAGWWYARVPVYNPVIYRPAEAATANRFEVLKAATIPRLYHSTAHLLSDGRVLVAGSNPNHNYNFTVPFPTELSVEAFSPPYLTSGKPRPSISSVKPGMNLAYKQKFSVEFQVKVRQLGKFYLTMVAPSFTTHSFSMNQRLLLLAVNRVRRMSSGSYAVEGDAPASAAVAPPGYYQLFVVYEGVPSVGKWVHIK* 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2265422 2267057 + Vvi2g241 Vvi2g241 782940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g241 544 Pfam Galactose oxidase-like, Early set domain 439 543 IPR015202 -
Vvi2g241 544 PANTHER SECRETED PROTEIN-RELATED 7 544 - -
Vvi2g241 544 Gene3D - 26 438 IPR037293 -
Vvi2g241 544 SUPERFAMILY E set domains 436 543 IPR014756 -
Vvi2g241 544 CDD E_set_GO_C 435 543 IPR015202 -
Vvi2g241 544 Pfam Glyoxal oxidase N-terminus 44 286 IPR009880 -
Vvi2g241 544 Gene3D Immunoglobulins 439 544 IPR013783 -
Vvi2g241 544 PANTHER WSC DOMAIN-CONTAINING PROTEIN ARB_07867-LIKE 7 544 - -
Vvi2g241 544 SUPERFAMILY Galactose oxidase, central domain 97 434 IPR011043 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g241 - - - vvi:100259927 1097.42
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g241 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0186 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0070000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1