Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g25 ATGGTTGATGATTCCTCTTTGAGGTGTGTGTTTCCTTGTGAAGGAAACGAGAGGCCCAGTCAAGGTCTCTCACTCTCTCTCAGTTCCAGCAATCCCTCTAGTATTGGGTTACAATCATTTGAACTCAGACACACTCATCATCAAGAGCAACAAATGATGCAGGATGGGTTTCTGGGAAAAGCTGCAAATCTTAATCAAGGGAACTTCCAGCTGAGGAACTCAAAGTACTTGGGTCCTGCTCAGCAGCTTCTGAACGAGTGCTGTAACCTTGGAACAAAGCAGATTGATCCACCTAGGCAAAAGGCCCCCAAGACCAACCAGTGGGAGGATGAGAATGGAAGCAGTAGTAGCTGTTCAAGAAAGCCATCTCTCTACTCTCTGGAGCTCATGGAATTGCAGAAGAGAAAATCAAAGCTGCTTTCAATGCTTGAGGAGGTTGATAGAAGATACAAGCACTACTGCGATCAGATGAAGGCGGTGGTCTCATCCTTTGAAGCAGTGGCTGGAAACGGGGCTGCGAGAGTCTACTCGGCGTTGGCTTCAAAAGCCATGTCTAGGCATTTTAGATGTCTGAGAGACGGCATTGTGGGTCAGATTCAGGCCACTAAGAAGGCCATGGGAGAGAAAGACCCAGTTGCACCAGGCACAACCCGAGGGGAGACCCCCAGGCTAAGGGTTCTTGATCAAGCCCTGAGGCAACAGAGGGCATTTCAGCAGATGAGCATGATGGAGAGCCATCCATGGAGACCCCAACGAGGCTTACCCGAGAGATCAGTCTCTGTGCTTCGAGCTTGGTTGTTCGAGCACTTCCTCCACCCGTATCCCAGCGATGTAGATAAGCACATCTTAGCCCGCCAAACTGGTCTCTCAAGAAGCCAGGTATCCAATTGGTTCATCAATGCGAGGGTGAGGCTATGGAAACCCATGGTGGAAGAGATGTACTTAGAAGAAACAAAGGAGCAAGACAACCTGGGCTCCCCAGATGGGGCTACAGACCCCGACGACAATGGCCGGCCGAACCCTAATCCCCAGCCACCCGTGGAGTTGGACTTCTCCTCTTACAATCACCACACGGCCGGCGCTGTTTCTTTCACTAACGACAGTGCCCATCATAATTTCGGTGGCAGCGGCGTGTCCTTGACGCTGGGCTTACAACAGCATGGTGGAAGCGGGGTGAGCTTAGCATTCTCACCTGCATCACAGAGCTCTCTCTTCTACTCTAGAGACCCCATTGAAGATTGCCAACCAGTTCAGTACTCTCTTTTAGATGGAGAAGGACAGAACTTGCCTTACAGAAACTTGATGGGAGCGCAGTTGCTCCACGACTTGGCCGGATAA 1338 50.82 MVDDSSLRCVFPCEGNERPSQGLSLSLSSSNPSSIGLQSFELRHTHHQEQQMMQDGFLGKAANLNQGNFQLRNSKYLGPAQQLLNECCNLGTKQIDPPRQKAPKTNQWEDENGSSSSCSRKPSLYSLELMELQKRKSKLLSMLEEVDRRYKHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQATKKAMGEKDPVAPGTTRGETPRLRVLDQALRQQRAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEQDNLGSPDGATDPDDNGRPNPNPQPPVELDFSSYNHHTAGAVSFTNDSAHHNFGGSGVSLTLGLQQHGGSGVSLAFSPASQSSLFYSRDPIEDCQPVQYSLLDGEGQNLPYRNLMGAQLLHDLAG* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 330475 334581 + Vvi2g25 Vvi2g25 782724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g25 445 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 347 405 - -
Vvi2g25 445 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 6 336 - -
Vvi2g25 445 MobiDBLite consensus disorder prediction 318 352 - -
Vvi2g25 445 Gene3D - 251 313 - -
Vvi2g25 445 MobiDBLite consensus disorder prediction 94 119 - -
Vvi2g25 445 SUPERFAMILY Homeodomain-like 249 314 IPR009057 -
Vvi2g25 445 SMART HOX_1 248 312 IPR001356 GO:0003677
Vvi2g25 445 Pfam Associated with HOX 71 195 IPR006563 -
Vvi2g25 445 ProSiteProfiles 'Homeobox' domain profile. 245 308 IPR001356 GO:0003677
Vvi2g25 445 CDD homeodomain 248 309 IPR001356 GO:0003677
Vvi2g25 445 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 336 - -
Vvi2g25 445 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 347 405 - -
Vvi2g25 445 SMART prehox3 65 197 IPR006563 -
Vvi2g25 445 Coils Coil 129 149 - -
Vvi2g25 445 Pfam Homeobox KN domain 265 304 IPR008422 GO:0003677|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14574 PF07526 POX 4.10E-48 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g25 - - vvi:100262204 796.578