Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g250 ATGGGAAAGAAGGGAGGGTCCTCCTGGTTGACAGTGGTGAAAAGGGCCTTCAGGTCTCCAATCAAGGACAATGAGAAAAAGAGTAGCAGAAGGAGAGAAGAGCATGAGCTAGAAGAAGAAGAAGAGGAAAAGAGAGAGAAGCGAAGATGGATCTTCCGGAAACCTACTACTACTACCACTACTACTAATCATGTTCAAGTTCAAGAATGTGAAACAAAGATGATATCAAGTGTACCCACAAATCCCATTTTGGTTGCTGAGCAGAGGCATGCAATTGCAGTGGCAGCAGCCACAGCAGCGGCAGCTGAAGCTGCTGTGGCAACAGCCCAAGCAGCTGTGGAGATTGTCCGTCTCACTAGGCCATCCAGCTTCTTCAGAGAACACTACGCTGCTGTAGTCATTCAGACAGCTTTCAGAGGCTACTTGGCAAGGACAGCGCTTCGTGCACTTAAGGGTCTTGTAAAACTTCAAGCTTTGGTAAGAGGACACAATGTTCGAAAGCAGGCGAAGATGACACTGAAATGTATGCAAGCTCTGGTCCGAGTGCAGTCTCGGGTGCGTGATCAGCGTGCGAGGCTTTCGCATGAAGGGAGCAGGAGGTCAATGTTTGCTGAAACCAACAGCCTATGGGAGTCTCGATATCTTCAGGAAATTAGACACAGAAAGTCCATGTCGAGGGATAGAAGCAGCATAGCAGATGAGTGTTGCGGCCGCCCCCATGAGATTGAGGAGATTGAAGCCATGTTCAGAAGTAGGAAGGAAGGTGCATTAAAACGTGAAAAAGCCCTGGCTTACGCTTTCTCTCATCAGGTATGGAGATCAGGAAGGAACCCATTTGCAGGAGATGAAGAAGATCTAGAGGAAAGAACAAAATGGCTTCAAAGGTGGATGGCAACAAAGCGATGGGAAAGCAGCAGCAGAGCTTCTACTGATAAAAGAGATGCTATAAAGACGGTTGAAATTGACACTTCTAGGCCTTATTCTTACTCTGCTAGTAATGTTCGAAGGTCCTCAGTTTATCAAAATCAACACCTCAGACCACCCACCCCACATTCCACTGCCTCTCCCTTCCACAAAGCGCACCACAACCTCTCTCTCCACCTCTCACCTGTCACTCCCTCTCCTTCCAAAACAAGACCCCTGCAAGTCCCAAGCACAAATGGGGATGTTGCTAGTGCTGTATTGCCCAACTACATGGCTGCCACTGAGTCTGCCAAGGCTCGGGTTCGTTCAGAAAGTGCACCAAGACAGAAGCCCTCAACGCCAGAGAGAGAGCGAGGAGGTGGTATGCTCAGCAAGAGCCTGAGAAGCCCCAGCTTCAAAAGTGTTCATGCCAACCTCTCTTCCTGCTACACTGACAGCCTTGGTGGAGAGATTTCTCCAACTACAACCAGTACCGAGCAAAGAGGGTGGCTAAGATGA 1422 48.95 MGKKGGSSWLTVVKRAFRSPIKDNEKKSSRRREEHELEEEEEEKREKRRWIFRKPTTTTTTTNHVQVQECETKMISSVPTNPILVAEQRHAIAVAAATAAAAEAAVATAQAAVEIVRLTRPSSFFREHYAAVVIQTAFRGYLARTALRALKGLVKLQALVRGHNVRKQAKMTLKCMQALVRVQSRVRDQRARLSHEGSRRSMFAETNSLWESRYLQEIRHRKSMSRDRSSIADECCGRPHEIEEIEAMFRSRKEGALKREKALAYAFSHQVWRSGRNPFAGDEEDLEERTKWLQRWMATKRWESSSRASTDKRDAIKTVEIDTSRPYSYSASNVRRSSVYQNQHLRPPTPHSTASPFHKAHHNLSLHLSPVTPSPSKTRPLQVPSTNGDVASAVLPNYMAATESAKARVRSESAPRQKPSTPERERGGGMLSKSLRSPSFKSVHANLSSCYTDSLGGEISPTTTSTEQRGWLR* 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2335461 2337426 - Vvi2g250 Vvi2g250 782949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g250 473 SMART iq_5 126 148 IPR000048 GO:0005515
Vvi2g250 473 SMART iq_5 149 170 IPR000048 GO:0005515
Vvi2g250 473 MobiDBLite consensus disorder prediction 367 389 - -
Vvi2g250 473 Pfam IQ calmodulin-binding motif 130 148 IPR000048 GO:0005515
Vvi2g250 473 Pfam IQ calmodulin-binding motif 154 170 IPR000048 GO:0005515
Vvi2g250 473 PANTHER PROTEIN IQ-DOMAIN 14-LIKE ISOFORM X1 1 425 - -
Vvi2g250 473 Coils Coil 23 50 - -
Vvi2g250 473 Gene3D - 126 175 - -
Vvi2g250 473 ProSiteProfiles IQ motif profile. 127 155 IPR000048 GO:0005515
Vvi2g250 473 ProSiteProfiles IQ motif profile. 151 178 IPR000048 GO:0005515
Vvi2g250 473 MobiDBLite consensus disorder prediction 409 423 - -
Vvi2g250 473 MobiDBLite consensus disorder prediction 20 47 - -
Vvi2g250 473 MobiDBLite consensus disorder prediction 366 389 - -
Vvi2g250 473 PANTHER IQ-DOMAIN 5-RELATED 1 425 - -
Vvi2g250 473 MobiDBLite consensus disorder prediction 403 473 - -
Vvi2g250 473 MobiDBLite consensus disorder prediction 435 473 - -
Vvi2g250 473 Pfam Protein of unknown function (DUF4005) 363 443 IPR025064 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g250 - - - vvi:100263362 834.328
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g250 Vvi15g624 ECH
Vvi2g250 Vvi16g977 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g250 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g01956 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54