Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g254 ATGCAGAAGCCACAGGGTGAGTCGGTTAGTGGCGTCCACACTGAAAGTGAGACCACTGGGAAGGTCATCACTTGCAAAGCTGCTGTTGTGCTGGGTCCGGGACAGCCCTTTGTCATAGAGGAAATTCAAGTTGATCCCCCTCAGAAAATGGAGGTTCGAGTCAAGATCCTCTATACTTCAATCTGCCACACTGATCTCAGCTATTGGAAGGGCGAGAGCGAAGCTTACCGAGTGTATCCTCGGATTTTAGGCCATGAAGCTGCCGGAATTGTTGAGAGTGTGGGAGAGGGTGTTGTGGACATGAGGAAAGGTGACCATGTAATTCCAATCTTTAATGGGGAGTGTGGGGACTGCGTCTACTGCAAGTGCGACAAAACTAATCTCTGTGAGAGGTTTAGGGTACATCCGCTGAGGAGCGTGATGGTGAACGACGGCAACTGTAGGTTTTCCACCAAAGATGGGAAACCCATCTTCCATTTTCTCAACACTTCAACTTTCACCGAGTACACCGTCCTTCACTCCGCCTGCGTCGTCAAGATCGACTCCAAGGCTCCTCTCAAGAAGATGATCTTGCTCAGCTGTGGCGTCTCTTCTGGGCTTGGAGCTGCATGGAACACTGCCAAGGTGCAAGCAGGGTCGAGTGTGGCGATTTTCGGGCTGGGTTCAGTTGGTCTTGCTGCTGCTGAAGGAGCAAGGACCAGAGGAGCTTCAAAAATAATAGGAGTTGATATCAACCCAAACAAATTTATCAAAGGAAAAGCAATGGGGCTCACTGATTTCATCAACCCAAATGATTCAAAGAACCCTGTGCATGAGATAATCCAGGAAATGACAGGAGGAGGAGTAGACTACAGCTTTGAATGTGCAGGCAATTTGGACGTTCTGAGGGAGGCCTTCTTGTCCACCCATGAGGGATGGGGTATGACAGTTCTTCTGGGAATTCATCCAACTCCGAGGATGCTCCCTATCCATCCTATGGAATTGTTTGATGGTCGGAGGATTATAGGATCAGTGTTCGGAGACTTCAAAGGGAAGACCCAGCTTCCTCATTTTGCCCAACAATGCATGCGCGGGGTGGTGAATTTGGACGAGTTCATCACTCATGAGCTTCCATTTGAGAAGATAAATGAAGCATTTCAGCTGCTTGCTGATGGGAAATCCTTGAGATGCGTTCTACACCTTTGA 1185 48.86 MQKPQGESVSGVHTESETTGKVITCKAAVVLGPGQPFVIEEIQVDPPQKMEVRVKILYTSICHTDLSYWKGESEAYRVYPRILGHEAAGIVESVGEGVVDMRKGDHVIPIFNGECGDCVYCKCDKTNLCERFRVHPLRSVMVNDGNCRFSTKDGKPIFHFLNTSTFTEYTVLHSACVVKIDSKAPLKKMILLSCGVSSGLGAAWNTAKVQAGSSVAIFGLGSVGLAAAEGARTRGASKIIGVDINPNKFIKGKAMGLTDFINPNDSKNPVHEIIQEMTGGGVDYSFECAGNLDVLREAFLSTHEGWGMTVLLGIHPTPRMLPIHPMELFDGRRIIGSVFGDFKGKTQLPHFAQQCMRGVVNLDEFITHELPFEKINEAFQLLADGKSLRCVLHL* 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2368433 2370940 + Vvi2g254 Vvi2g254 782953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g254 394 PANTHER ALCOHOL DEHYDROGENASE 18 393 - -
Vvi2g254 394 Pfam Zinc-binding dehydrogenase 223 341 IPR013149 -
Vvi2g254 394 Gene3D - 28 389 - -
Vvi2g254 394 PANTHER ALCOHOL DEHYDROGENASE-LIKE 3 18 393 - -
Vvi2g254 394 Gene3D - 199 337 - -
Vvi2g254 394 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 84 98 IPR002328 GO:0008270|GO:0016491
Vvi2g254 394 SUPERFAMILY GroES-like 344 393 IPR011032 -
Vvi2g254 394 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 185 358 IPR036291 -
Vvi2g254 394 CDD alcohol_DH_plants 23 393 - -
Vvi2g254 394 SUPERFAMILY GroES-like 18 210 IPR011032 -
Vvi2g254 394 Pfam Alcohol dehydrogenase GroES-like domain 51 151 IPR013154 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g254 K00001 E1.1.1.1, adh; alcohol dehydrogenase [EC:1.1.1.1] - vvi:100256495 808.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g254 Vvi16g731 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g254 . . . . Bpe05g00386 . Bma07g01033 . . . Cma02g00945 Cma15g01322 Car02g00694 Car15g01187 . . Cpe05g00768 . . . . . . . . . . . . . . . Cone12ag0581 . . . Csa05g00159 Chy09g01339 . . . . Bda09g00635 Bpe08g00906 . Bma05g00537 . . Cmo02g00954 Cmo15g01385 . . . . . . Bhi12g00080 . . Lac11g1903 Hepe06g1432 . Lcy12g1511 Cla01g00141 Cam01g0146 Cec01g0142 Cco01g0147 Clacu01g0141 Cmu01g0141 Cre09g2365 Lsi09g00132 . . Cme09g01886
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008094 1 1 1 2 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34