Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g256 ATGAAGGGAAGGTCGCACCGCCTTCCTAGCTCAGATCCTCCCGAGGACTGGGTGGATGGTTCTTGGACGGTGGATTGCGTCTGTGGTGTGAATTTTGATGATGGGGAAGAGATGGTGAACTGCGATGAATGTGGCGTGTGGGTGCATACGCGGTGCTCGCGCTATGTGAAGGGGGAGAAGTTGCTGTGGACGGATATACCAATTGAGGAGAGGGTACATGTTCAGGGCATTCCGGGAGGCGAACCTGGCCTGTTTGAAGGTCTGTCCTCCGTTTTCACGCCGGAGTTGTGGAAGTGCACTGGTTACGTGCCCAAGAAGTTCAATTTCCAGTATAGAGAGTTCCCCTGTTGGGATGAGAAGGAAGAGGCTGATTCTAAAATTGAGGAAGAAAATGAAAATCCTGTGGACAAAGGAGCCGGGGTTCTGTTTTCACTGTCAAAGGAGGCTACGTGGGAGGCTGGGGATTCTGATGTTAGGCCTGCTCAGAATGGCGTGAAGAAGGAGAGAAGCTTACTCCGTCCATTTGTGGTTCATCCGAGTAAGAGGAAGAAAGAAGATTTCGGCCCATCAAAGGATCGCAGTGGAAAGAAGAGGATTAGGACTGCTGAAAAAGAGGATACTAAAAGAAGAGGTTCACATTCTTCCAAAACAGGGTTTACATCCTCTAGTGATGCAAAACAGTTGGAATATCACGAAGACAGAAGTTCCAAGCTTCCCAAGACTAATAATCAGAGTAACAATAAAGGGAATTTGAGGGGCACTCTGCCCACAGAGCCTGCATCTGATGTTTTTCATGTAGTGGACAGTAATGTTGACAAGTCGAATGACAGCTTAGTGGCTGCTGAGCACCATTCGGAATCTTTTCCTGCTGATGCATCTAGACACGATTTTCCCATTGGAGCTGGTCTAGATGAAGATAAGACCGAGCATCAAGTTCCTGCAAGATCTGAAAGTTCTCCTAAAACTGACATCGTATCATCAACATTAGAAAACAACACAGTTGAGAGTGTTCCTATGAAGGAAGAGGTGGTTAACATGGCTGCTGCTAATTTAGATGATAATGGAGGTTCCTATAAAAATATGGAAATCGATGTACAGAAATCAAACCCTCCTTTCGAAGAGGTGCCTAGTGTAGCATCAAATTTGAAAGAAAGTCAAGTTCTTCTGGATTCAAATGGTGACATGTTGCTAAATTCTGTAAAGCCTGATTTAAAAGTGAAAGCAGATGTGGATGATGATAATTCTGGAAGGATCTTGGATTCTCAGTCTTCTGCACTTGTTGATGTAAAGCCCATTGGCACTGAGCACCTATCTCAAATTCCAGGGATATCTGCAGATCAGATGTCCGAAAATTCTAAATTGAATGATTTAGTGGCTCTAAGCTTTTCGCAATGCAGTGACCATAAGGCACAAGATGTTGACAAAAGTGCAGAAGTAGCCAGTGACCCTCATGCAGATAAAGCTGATCAATTATCTGGTGGCACTCGTCTGCATAAGCAGGAATTAGATGTCTCAGATGGTTCCATGATAGTGCAGAAAAGTACTTCAGAACCCAAACATGGTTCAAAACTAGCTGAAGAGCCACCAAAATTAGATGGAACTGTATTTAGCTCTCAAGCACTATCTAGTCAGCGTAAAATGGTAGTATGTGTAGGAAAATCTTCTCCGAGTTCATCTACTGTTGTGATCTCCAAGTCATCTGTTTCTGATAACTGTAAACCCATGAATACTCAGAACTCTAATCCTATTGCTAAAGAACGAATAGTTTCTAACTGCAATACTAACAGTAAGAAAGATCATGCTGCAAGTGATGTGGTCAGGGATGAAGACAGGCATGAAATGCCAAGGAAAACAGTTAAAGAGCGTCCAAAATCATCCATCAATCCTGCTTTGAAAGCATCACACTCAAACAGGATTTCCCATTCTTCTGTTTCCAAGAGACCCCTGTCAGATTCAAAAGATTCAAAAGATCCTGTGTTGCACTCGTCCTCTAAGGCATCTTCAGCCCAGAATACTGCTGTTCCTTCAGGTTCTGGTGACTCTGCTGGTGAAAAGTTTAGCACTTCAAATTCCCAGTCATCATCTAAGGTGAATAATATGTCATCTATGCATCCTACTGCACCTTCAAATTCTCCTGCAACACTAAGCGATGAAGAGCTTGCTTTACTTTTGCATCAAGAACTTAATAGTTCTCCTAGAGTGCCTCGGGTACCACGTGTGCGCCATGCGGGTAGCTTACCTCAGTTGACTTCTCCAACTCCTACAAGCATGCTGATAAAGCGAACATCATCTTCTGGAGGAAAGGATCATGGTTTGATTCCTAGAAGAAAAAGCAAGGATATTTCCAAAGATGGGTCTCGAGGTTTTCGGGAGCGTGATGATGAAGCCAAGAAAATGGACAGAGTGCCTTCACCTGATCAGAGGAGACATGATCCAGTGCATGCAGCAGATGCTTCTACGAAGAGGGAAGCAGACGATGGGTTTCCGAAAGCAGAACATTCTGTCAAGAAGAATATTCCCCTTGCCTCCAACACAACTGCAAATAGTGGTCCATCCTCCTCAAATGAGGTTAATGATCAAAATTTAGCATCTGTACGTAATTCACCAAGGAATATGTCTGATGATGATGCGGGCACTGTACGGGTTCCTGCACATCGCACTTTACCAGGTTTGATCAATGATATTATGAGCAAAGGCAGGCGCATGACATATGAAGAACTCTGTAATGCAGTCTTGCCGCACTGGCATAACTTGAGGAAGCATAATGGAGAGCGTTATGCATATTCAAGTCATTCGCAGGCTGTTCTTGATTGCCTGAGGAACCGGAATGAATGGGCACGGTTGATTGATCGTGGTCCCAAGACCAATGCGAGCAGGAAGAGACGCAAGCTTGATGCTGAACCATCAAGCTTTGAATTGGATGATAATGAATATGGCAAGGGCAAAATGGCAAAGGAGGTAGAAAGCAAGAGTCTTGAATCACACAGAGAAGAGTTTCCAAAGGGCAAGCGGAAAGCACGACGCAGACGACTGGCTCTGCAAGGCCGAGGAATAAAAGATGTCAGGAAAAGACGAAAGGCAGCTATCATCAGTGATGATGACATTGAACCATTTTCTAATTCTAGCGATGAGAGCATATTCAGTGAGGATGAGATTCAGGGAGGTGGAACATGTCCTGTTGGAAGTGAGGCTTCAGCTAGCTCAGATGAGGTGGGAACCAGGCTATAG 3228 44.45 MKGRSHRLPSSDPPEDWVDGSWTVDCVCGVNFDDGEEMVNCDECGVWVHTRCSRYVKGEKLLWTDIPIEERVHVQGIPGGEPGLFEGLSSVFTPELWKCTGYVPKKFNFQYREFPCWDEKEEADSKIEEENENPVDKGAGVLFSLSKEATWEAGDSDVRPAQNGVKKERSLLRPFVVHPSKRKKEDFGPSKDRSGKKRIRTAEKEDTKRRGSHSSKTGFTSSSDAKQLEYHEDRSSKLPKTNNQSNNKGNLRGTLPTEPASDVFHVVDSNVDKSNDSLVAAEHHSESFPADASRHDFPIGAGLDEDKTEHQVPARSESSPKTDIVSSTLENNTVESVPMKEEVVNMAAANLDDNGGSYKNMEIDVQKSNPPFEEVPSVASNLKESQVLLDSNGDMLLNSVKPDLKVKADVDDDNSGRILDSQSSALVDVKPIGTEHLSQIPGISADQMSENSKLNDLVALSFSQCSDHKAQDVDKSAEVASDPHADKADQLSGGTRLHKQELDVSDGSMIVQKSTSEPKHGSKLAEEPPKLDGTVFSSQALSSQRKMVVCVGKSSPSSSTVVISKSSVSDNCKPMNTQNSNPIAKERIVSNCNTNSKKDHAASDVVRDEDRHEMPRKTVKERPKSSINPALKASHSNRISHSSVSKRPLSDSKDSKDPVLHSSSKASSAQNTAVPSGSGDSAGEKFSTSNSQSSSKVNNMSSMHPTAPSNSPATLSDEELALLLHQELNSSPRVPRVPRVRHAGSLPQLTSPTPTSMLIKRTSSSGGKDHGLIPRRKSKDISKDGSRGFRERDDEAKKMDRVPSPDQRRHDPVHAADASTKREADDGFPKAEHSVKKNIPLASNTTANSGPSSSNEVNDQNLASVRNSPRNMSDDDAGTVRVPAHRTLPGLINDIMSKGRRMTYEELCNAVLPHWHNLRKHNGERYAYSSHSQAVLDCLRNRNEWARLIDRGPKTNASRKRRKLDAEPSSFELDDNEYGKGKMAKEVESKSLESHREEFPKGKRKARRRRLALQGRGIKDVRKRRKAAIISDDDIEPFSNSSDESIFSEDEIQGGGTCPVGSEASASSDEVGTRL* 1076
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2386823 2397387 + Vvi2g256 Vvi2g256 782955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g256 1075 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 65 IPR013083 -
Vvi2g256 1075 MobiDBLite consensus disorder prediction 239 254 - -
Vvi2g256 1075 MobiDBLite consensus disorder prediction 1031 1075 - -
Vvi2g256 1075 MobiDBLite consensus disorder prediction 551 599 - -
Vvi2g256 1075 MobiDBLite consensus disorder prediction 955 1009 - -
Vvi2g256 1075 MobiDBLite consensus disorder prediction 629 646 - -
Vvi2g256 1075 MobiDBLite consensus disorder prediction 746 763 - -
Vvi2g256 1075 MobiDBLite consensus disorder prediction 471 532 - -
Vvi2g256 1075 MobiDBLite consensus disorder prediction 317 335 - -
Vvi2g256 1075 SUPERFAMILY FYVE/PHD zinc finger 11 57 IPR011011 -
Vvi2g256 1075 MobiDBLite consensus disorder prediction 1060 1075 - -
Vvi2g256 1075 MobiDBLite consensus disorder prediction 551 859 - -
Vvi2g256 1075 MobiDBLite consensus disorder prediction 471 503 - -
Vvi2g256 1075 MobiDBLite consensus disorder prediction 153 338 - -
Vvi2g256 1075 MobiDBLite consensus disorder prediction 161 213 - -
Vvi2g256 1075 MobiDBLite consensus disorder prediction 770 833 - -
Vvi2g256 1075 MobiDBLite consensus disorder prediction 600 623 - -
Vvi2g256 1075 MobiDBLite consensus disorder prediction 298 316 - -
Vvi2g256 1075 PANTHER UNCHARACTERIZED 1 1070 - -
Vvi2g256 1075 MobiDBLite consensus disorder prediction 838 859 - -
Vvi2g256 1075 MobiDBLite consensus disorder prediction 955 1000 - -
Vvi2g256 1075 MobiDBLite consensus disorder prediction 661 716 - -
Vvi2g256 1075 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SET-26-RELATED 1 1070 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g256 - - - vvi:100244469 2023.44
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g256 . . . Bda08g00752 Bpe05g00387 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0587 Cone12ag0579 . . . . . . . . . . . . Bma05g00538 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004431 2 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 5 4 1 43