Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g257 ATGACTATTGCTGATTCGGGTTTTATGATGGAAAATGGAGGAAGTTGCTTACCTTACACACCGGAGCAAGAGAAACAGATTGTTGATGATTTGATGAATAAATCAGAGTCCAGTTTGAAAGAAGGCAACTTGTTTTTTTTCTTCCATTTATTCAGATGGTTTACAAGTTGGCAGAGATACATTGGACAGGGCAATGGTGAATATCCAATTAATGGGCATTTGTCTGATTCACAGCGTTTGGATGCGGTTCCATCAAAGACAGCAGAGAGACCTGGACCTATTGATAATTCTGATATTGTTTTAAATGGAAATGAATGTGAACTTGATGATCTGGAGATTCTTAGAACGCTAGAGGAGGGACGTGATTATGTTTTAGTTCCTCAAGAAGTTTGGGAGAAGCTTTTTGACTGGTATAAAGGAGGACCGGCATTACCCAGAAAGATGATTTCTCAAGGTATTACTCACAAGAAATTCATGGTGGAGATTTACCGACTATGCCTTAAGTTAACTGATTCCAGAGACAACAGTCAATCAGTTATAAGGTTGAGTAAAAAGGCTTCTGTGCATGAGCTTTATGAGAGGGTGTGTACACTTAAAGTGGTAGAGCAGGAAAAGGCCCGCATATGGGACTATTTCAATAAGCGGAAACAAGCAATATTAGTTGCTTCAAACCAAACTCTTGAGGAATCTAACTTGCAGATGGACCAAGATATTCTTTTGGAGGTGCAACTTGATGGATATTGGCCCTCTGGATTTGGCATGGATTCAACCGGAAATGAACTGGCTTTGGTACCAATGGAACCTCCAAGATCCTCTGTATCAATTGCAGGAGGCCCAACCCTCTCAAATGGTTATTCCAAAGTTCATACCTCCAATTTGTATCAGGGAAGTCCTTTAGGTTCAACATTTACAGATATGGAGGATGGATATGATGTTTTGAGGAGTGTAGCAAAAGGAGATAGGGGAGGTTTGGCAGGATTGCAGAATCTAGGAAACACTTGCTTTATGAACAGTGCTATTCAGTGTTTAGTACATACACCCCCCATATTTGAGTATTTCTTGCAAGACTACACCGAGGAGATCAACAAACAAAATCCATTAGGAATGAATGGTGAGCTTGCATTTGCTTTTGGTGAATTGTTGAGGAAATTATGGTCCTCTGGCCGGACACCAGTTGCACCTCGTGCATTTAAGGGAAAACTTGCTCGATTTGCTCCTCAGTTCAGTGGGTATAATCAGCACGATTCTCAAGAACTTCTTGCTTTCTTACTGGATGGACTGCATGAAGATTTGAATCGTGTAAAACAAAAGCCATATATTGAAACAAAGGATTCAAATGGTCGCCCAGATGAGGAAGTTGCTGACGAGTGTTGGAGGAATCATAAAGCTCGGAATGATTCATTAATTGTGGATGTTTGCCAGGGTCAATATAAGTCAACTCTGGTTTGCCCAGTTTGCAGCAAAATTTCAATAACATTTGATCCGTTCATGTATTTGTCATTGCCGCTGCCTTCAACGGTCACTCGGATAATGACGGTGACTGTGTTCTATGGTGATGGAAGTGGCCTTCCAATGCCCTACACTGTGACAGTGCTAAAACATGGTTACTGTAAAGATCTTAGCCAGGCATTGGCTGCTGCATGCTGCTTGAAGAGTGATGAAAATCTACTGCTTGCTGAGGTCTACGAACATCGGATATATCGATACATAGAGAATCCTTCGGAGTTATTGACTAATATAAAGGATGAGGAACATATTGTGGCTTACCGTCTTCCTAAGAAACGAGCAGGATTAACAAGACTGGAGATAATTCATAGGTGTCAGCAACAATGTACACCAGACAGTCTGAAGGGTGGTGAGAGGAAGCTTTTGGGAGCACCACTAGTTACTTATTTAGGAGAGGATGCTCAAACTGGAGCTGATATTGACATTGCCGTTTCTAGATTGCTCTCTCCATTGAGAAGGAAAACATATCCCTCTTCGTCTAATGTTCATAGTGGCAAGGAAAATGGCTCCGTTTCAGAAGCTACTGATAATCCTACAAACAGCTGCAATACTCAATCTGGATCTGGGAACCAGTCGACAGATGGCACAGAACTAGAAGAAATGTCCAGATGGGAGTTGTCCTTCCAGCTTTCCATTACTGATGAAAGGGGTTTGAGCTGCAAGCCTATTGAAAAGGATTCTCTCATAAGACCTGGTCAATTTATACGGGTTATGTTGGACTGGACTGACAAAGAACATGAATTATATGATGCCAGCTACCTCAGGGATCTTCCTGAGGTTCATAAGAATGGGTTCACCGCAAAGAAGACCAGGCCAGAAGCTATCACCCTGTTTTCATGCTTGGAGGCATTCCTGAAAGAAGAACCTCTAGGACCTCAAGACATGTGGTATTGCCCTAATTGCAAGGAACATAGACAAGCCACCAAGAAATTGGACTTGTGGAGGTTGCCAGATATTCTTGTGTTTCACTTGAAACGATTTTCATACAGCCGATACCTGAAGAACAAACTTGATACCCTTGTAAATTTTCCCATTCATAGTCTTGACTTGAGCCAATATGTGAAATGCAAGGATGCATCTTCACAATCTCATGTTTATGAGCTATATGCCATCAGCAACCATTATGGTGGCCTAGGCGGTGGGCACTACTCTGCCTATGCAAAGTTGATTGATGAAAACAGATGGTACCATTTCGATGACAGCCATGTTTCTCCCGTTGGCGAGAGCGAGATCAAGACATCAGCTGCATATGTGTTATTCTATCAACGAGTTAAAGCAGCTCCAAAGATTGGAACAGGGGAGCCTTCTCTGGGTCATACAAGTTCTTGA 2835 42.01 MTIADSGFMMENGGSCLPYTPEQEKQIVDDLMNKSESSLKEGNLFFFFHLFRWFTSWQRYIGQGNGEYPINGHLSDSQRLDAVPSKTAERPGPIDNSDIVLNGNECELDDLEILRTLEEGRDYVLVPQEVWEKLFDWYKGGPALPRKMISQGITHKKFMVEIYRLCLKLTDSRDNSQSVIRLSKKASVHELYERVCTLKVVEQEKARIWDYFNKRKQAILVASNQTLEESNLQMDQDILLEVQLDGYWPSGFGMDSTGNELALVPMEPPRSSVSIAGGPTLSNGYSKVHTSNLYQGSPLGSTFTDMEDGYDVLRSVAKGDRGGLAGLQNLGNTCFMNSAIQCLVHTPPIFEYFLQDYTEEINKQNPLGMNGELAFAFGELLRKLWSSGRTPVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIETKDSNGRPDEEVADECWRNHKARNDSLIVDVCQGQYKSTLVCPVCSKISITFDPFMYLSLPLPSTVTRIMTVTVFYGDGSGLPMPYTVTVLKHGYCKDLSQALAAACCLKSDENLLLAEVYEHRIYRYIENPSELLTNIKDEEHIVAYRLPKKRAGLTRLEIIHRCQQQCTPDSLKGGERKLLGAPLVTYLGEDAQTGADIDIAVSRLLSPLRRKTYPSSSNVHSGKENGSVSEATDNPTNSCNTQSGSGNQSTDGTELEEMSRWELSFQLSITDERGLSCKPIEKDSLIRPGQFIRVMLDWTDKEHELYDASYLRDLPEVHKNGFTAKKTRPEAITLFSCLEAFLKEEPLGPQDMWYCPNCKEHRQATKKLDLWRLPDILVFHLKRFSYSRYLKNKLDTLVNFPIHSLDLSQYVKCKDASSQSHVYELYAISNHYGGLGGGHYSAYAKLIDENRWYHFDDSHVSPVGESEIKTSAAYVLFYQRVKAAPKIGTGEPSLGHTSS* 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2398998 2409960 + Vvi2g257 Vvi2g257 782956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g257 944 ProSiteProfiles DUSP domain profile. 19 149 IPR006615 GO:0004843
Vvi2g257 944 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10-RELATED 14 928 - -
Vvi2g257 944 Gene3D - 8 162 IPR035927 -
Vvi2g257 944 Gene3D Cysteine proteinases 311 544 - -
Vvi2g257 944 SUPERFAMILY DUSP-like 16 149 IPR035927 -
Vvi2g257 944 MobiDBLite consensus disorder prediction 656 699 - -
Vvi2g257 944 Pfam Ubiquitin carboxyl-terminal hydrolase 326 923 IPR001394 GO:0004843|GO:0016579
Vvi2g257 944 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 868 885 IPR018200 GO:0004843|GO:0006511
Vvi2g257 944 Pfam DUSP domain 52 149 IPR006615 GO:0004843
Vvi2g257 944 Gene3D Cysteine proteinases 649 931 - -
Vvi2g257 944 CDD Peptidase_C19R 769 924 - -
Vvi2g257 944 MobiDBLite consensus disorder prediction 656 701 - -
Vvi2g257 944 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 326 341 IPR018200 GO:0004843|GO:0006511
Vvi2g257 944 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 14 928 - -
Vvi2g257 944 SUPERFAMILY Cysteine proteinases 323 926 IPR038765 -
Vvi2g257 944 Gene3D - 163 251 - -
Vvi2g257 944 SMART dusp 38 152 IPR006615 GO:0004843
Vvi2g257 944 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 325 926 IPR028889 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g257 - - - vvi:100259769 1911.35
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g257 . . . Bda08g00751 Bpe05g00390 . . . Cmo06g00541 . Cma02g00946 Cma15g01323 Car02g00695 Car15g01188 . . Cpe05g00767 . . . . . . . . . . . . . . . . . . . Csa05g00158 Chy09g01340 . . . . . . . Bma05g00539 Bma12g00420 . Cmo02g00955 Cmo15g01386 Cma06g00538 . Car06g00476 . Cpe08g00954 . Bhi12g00079 . . . . . Lcy12g1510 Cla01g00140 Cam01g0145 . . Clacu01g0140 Cmu01g0140 Cre09g2366 Lsi09g00131 . . Cme09g01887
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005583 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40