Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g259 ATGTCTATTGGAGAGCAGGCTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCATACTGGCCGGGTCTGTTTGCTAAGCTTGTAGAGAAGAAGAGTGTAGATGATCTAATCATGAATGTTGGTTCTGGTGGTGGTGGCGCACCCATGGCTGTTGCTACCATGGCTGGAGGCGGTGATGCTGCAGGTGCAGCTGCACCTCCACCTGAGGAGAAGAAGGAGGAACCAAAGGAAGAGAGTGATGAGGACATGGGATTCAGTTTGTTTGATTAG 336 50.0 MSIGEQACTLAILILHDDGIPVTAEKISTLLKAANVSVESYWPGLFAKLVEKKSVDDLIMNVGSGGGGAPMAVATMAGGGDAAGAAAPPPEEKKEEPKEESDEDMGFSLFD* 112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2414502 2415924 + Vvi2g259 Vvi2g259 782958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g259 111 CDD Ribosomal_P1 5 110 - -
Vvi2g259 111 Hamap 50S ribosomal protein L12 [rpl12]. 6 111 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vvi2g259 111 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 111 - -
Vvi2g259 111 Pfam 60s Acidic ribosomal protein 22 110 - -
Vvi2g259 111 MobiDBLite consensus disorder prediction 88 105 - -
Vvi2g259 111 MobiDBLite consensus disorder prediction 78 111 - -
Vvi2g259 111 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED 1 111 - -
Vvi2g259 111 Gene3D - 1 63 IPR038716 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g259 K02942 RP-LP1, RPLP1; large subunit ribosomal protein LP1 - vvi:100249556 168.318
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g259 Vvi15g618 ECH
Vvi2g259 Vvi16g970 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g259 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000947 3 3 1 3 3 1 4 3 2 2 2 2 3 2 3 4 3 3 2 3 2 2 3 3 3 2 3 4 4 3 81