Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g268 ATGGCCCCACCTAAGCCCGGTGGTAAATCCAAGAAAGTGACTGGAATGATTAAGCTGGCTCTGGAGGCGGGGAAGGCCACTCCGGCACCGCCCGTCGGGCCAGCGCTGGGTTCCAAGGGTGTGAATATCATGGCTTTCTGTAAGGATTACAATGCTAGGACCGCCGACAAGGCTGGCTATGTTATTCCTGTTGAAATTACGGTCTACGATGATAAGAGCTTCACTTTTGTTTTGAAGACCCCGCCTGCTTCAGTTTTGCTCCTTAAGGCTGCAGGAGCGGAGAAAGGCGCAAAAGACCCAAAGCAAGAGAAGGTGGGGAAGATCACAATTGAGCAATTGCGAACCATTGCAACTGAAAAGCTGCCAGACTTGAACTGCACTAGTATTGAATCAGCCATGAGAATTATTGCTGGCACTGCTGCTAACATGGGCATTGAAGTTGATCCTCCTGTTCTTGAACCCAAAAAGAAGGTCATTTTATAG 483 49.07 MAPPKPGGKSKKVTGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGAEKGAKDPKQEKVGKITIEQLRTIATEKLPDLNCTSIESAMRIIAGTAANMGIEVDPPVLEPKKKVIL* 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2479857 2482925 + Vvi2g268 Vvi2g268 782967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g268 160 Hamap 50S ribosomal protein L11 [rplK]. 13 149 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vvi2g268 160 PANTHER 60S RIBOSOMAL PROTEIN L12 11 148 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vvi2g268 160 SUPERFAMILY Ribosomal protein L11, C-terminal domain 75 148 IPR036769 -
Vvi2g268 160 Pfam Ribosomal protein L11, RNA binding domain 79 147 IPR020783 GO:0003735|GO:0005840|GO:0006412
Vvi2g268 160 CDD Ribosomal_L11 17 147 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vvi2g268 160 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 9 92 IPR036796 -
Vvi2g268 160 Pfam Ribosomal protein L11, N-terminal domain 17 74 IPR020784 -
Vvi2g268 160 ProSitePatterns Ribosomal protein L11 signature. 134 148 IPR020785 GO:0003735|GO:0005840|GO:0006412
Vvi2g268 160 TIGRFAM L11_bact: ribosomal protein uL11 11 148 IPR006519 GO:0003735|GO:0005840|GO:0006412
Vvi2g268 160 Gene3D - 8 79 IPR036796 -
Vvi2g268 160 PANTHER RIBOSOMAL PROTEIN L11 11 148 - -
Vvi2g268 160 SMART rl11c 17 148 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vvi2g268 160 Gene3D - 80 160 IPR036769 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g268 K02867 RP-L11, MRPL11, rplK; large subunit ribosomal protein L11 - vvi:100263279 310.457
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g268 . . . . . . . . . . . Cma15g01332 . Car15g01197 . . . . . . . . . . . . . . . . . . . . . . Csa05g00149 Chy09g01346 . . . . . . . . . . . Cmo15g01394 . . . . . . Bhi12g00069 . . Lac11g1879 Hepe06g1420 . Lcy12g1498 Cla01g00132 Cam01g0134 Cec01g0135 Cco01g0136 Clacu01g0130 Cmu01g0132 Cre09g2373 Lsi09g00123 . . Cme09g01894
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012293 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 29