Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g269 ATGAGTATCGTGCGCCCTCTGAGACCAGCGTCAAGAGGGTATCGCTACGCCATAATACAAAGCCTTTTTTTTCTTCAAGTTGGAATCCTCTACTCTGAACACGACTGCTTGAAGATGGAAGTTCAAAATCTTGAACATGGCAATATAATTGAAATTCATGGAGATGTGCCAACTGTAGAAACGAGCCTAAGCAGAAGTAAGATATGTGAGGGAGCAACATGTGGATTCTCAGATGCTAAAACAATTTCCAAGGATGACAAAGAGCGTGCAGCATCCATGAAGAAACTTTTGATAGCAGTTGTACTGTGTATCATTTTCATGAGTGTTGAAGTTGCTGGAGGTATTAAAGCCAACAGTCTTGCAATTTTAACGGATGCAGCTCATCTGTTGTCAGATGTTGCTGCCTTTGCTATCTCTTTGTTCTCGCTTTGGGCAGCAGGATGGGAAGCGACTCCACGTCAATCTTATGGTTTCTTCAGGATTGAGATACTTGGTGCACTGGTTTCCATCCAGATGATATGGCTTCTTGCTGGGATCCTCGTATATGAAGCTGTTGCAAGAATTATCCATGATACAGGTGAAGTCCAGGGCTTTCTTATGTTTATTGTTGCTGCCTTTGGTCTAGTTGTTAATGTTGTTATGGCTCTCCTTCTCGGTCATGATCATGCTCATGGGCATGGTGGACATGATCACGGGCATGGTGGGCACGATCATGGGCATGTGATGACCACCATCATGCTCATGAAGCTGCAAAAGACACAGCGGAATATCAATGTACAGGGGGCGTATCTTCATGTACTTGGGGATTCCATCCAGAGCATTGGTGTAATGATTGGTGGTGCAATCATCTGGTATAAACCTGAGTGGAAGATTATTGACCTGATATGCACTCTCATATTCTCAGCAATTGTTCTGGGCACAACAATCAGGATGCTGCGGAACATTCTGGAGGTTCTGATGGAGAGCACACCGAGAGAGATTGATGCAACAAGGCTTGAGAAAGGTCTCTATGCTTAG 1017 44.25 MSIVRPLRPASRGYRYAIIQSLFFLQVGILYSEHDCLKMEVQNLEHGNIIEIHGDVPTVETSLSRSKICEGATCGFSDAKTISKDDKERAASMKKLLIAVVLCIIFMSVEVAGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAVARIIHDTGEVQGFLMFIVAAFGLVVNVVMALLLGHDHAHGHGGHDHGHGGHDHGHVMTTIMLMKLQKTQRNINVQGAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIIDLICTLIFSAIVLGTTIRMLRNILEVLMESTPREIDATRLEKGLYA* 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2485419 2489802 + Vvi2g269 Vvi2g269 782968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g269 338 Pfam Cation efflux family 96 320 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Vvi2g269 338 Gene3D Cation efflux protein transmembrane domain 92 319 IPR027469 -
Vvi2g269 338 SUPERFAMILY Cation efflux protein transmembrane domain-like 92 321 IPR027469 -
Vvi2g269 338 PANTHER METAL TOLERANCE PROTEIN A1 39 244 - -
Vvi2g269 338 PANTHER METAL TOLERANCE PROTEIN A1 250 337 - -
Vvi2g269 338 TIGRFAM CDF: cation diffusion facilitator family transporter 93 335 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Vvi2g269 338 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 39 244 - -
Vvi2g269 338 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 250 337 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g269 K14689 - cit:102623636 415.231