Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g27 ATGAAGGGGCTCGCCACCCACAGCGACGCTCTCCAATCCATCAAAACCCTTGTGCTGAAACGCCTATATCCGCAAGCCCTTAGAGCCTCAGCATCGCTCCTCCATCCTCCTCTCACTGATCAATCCTATGCCCTCTTCCTTAAATCAGGCTTCGCACTCGATGCCTTCCTCTCCAGCTTCATTGTCAACCGCTTTGCCATCTCAGGCGACTTCGCTCGCGCCCGCAGGTTCCTACTCGACACCCCATACCCCGACACAGTCTCCTGGAATTCTCTCATCTCTGGGTATGCTCGGTTTCGGCAACCCGGGCCCGTGTTCGACTTGTTCAATGGGTTGAGGCGATCCGGTCTGAGTCCTGATGAGTTCAGTTTGAGTTCTTTGGTCAAGGGGTGTGGTGTTCTTGAGCAAAATGAGGTTGCACATGGGGTTTGTTTGAAGATGGGGTTATTGAACGGTTTTGTGGTGAGTGGACTGCTGGATGGCTATGCGAAATTGGGTGATGTTGATTCAGCTGAGAAGTGTTTCAAAGAGTTTTATATTGCGGATTCTGTGGTTTGGACGGCTATGGTTTGTGGATTTGTTTGGAACGGAGAATTCGAGAAGGGGCGTGAGGTTTTTGTAGAGATGAGGGGTTTGGGTTTGGGTTTGGAGTTGAACGAGTTTAGCCTGACTAGTGTTCTTGGGGCACTGTCTGATGTTAGAGAGGGTGAACAGGTTTTTGGTTTAAGTGTTAAGATGGGTCTGTTATGCGGATGCTCAATTCATCTGAACAATGCATTGATGAATATGTATTCTAGGTGTGGGAGTAAATCCGATGCTATTAAAATGTTTGATGAAATGACTGAGCCGGATGTTGTTTCATGGACTGAGCGGATTGGTGCTGCTTATGACGCTATAGAAGCTTTTGAATTGTTTAGACTTGTGCTTTCAGGAAACATGGAAGTGAATGAGTATATGTTGATTAATGTTTTGTCTGCCATGAGGGAGCCAAAGTTGTTGAAATCTGGGAGGCAAATCCAAGGGCTTTGTCAAAAGGCTGGGTATTTGCTAGTGGCTTCTGTTAATAATGCATTGATTTTTATGTATGGGAAGTGTGGAGAGATGGTCGCTGCTAGGCACATTTTTGATGAAATGCTTTGTGGAGATTCCGTTTCATGGAATTCTCTGATTGCAGGGTATGCTGAGAATGGACTCATGAAACAGGCTCTTAAGGTGTTCTCTCAAATGCGTGATTATTTGCTACAACCCAATAAATATACTTTGGCTAGCATTCTAGAAGTAGCAGCAAACTCAAATTTTCCAGAGCAGGCAATGCAAATTCATTCATATATAGTCAAACTGGGATTCATAGTAGATGATTCAATGTTGTCTTGTCTAATAACAGCATATGGTAAATGCAATATGATTTGTGAATCAAAGAGGGTATACAGTGATATTAGTCAAATAAATGTGTTGCATCTTAATGCAATGGCAGCCACACTTGTCCATGCTGGTTGCCATGCTGATGCCCTCAAATTGTTCCAAACAGGATGGCGCTTGCATCAGGAAGTGGACTGCATAACATTAAGTATAGTACTTAAAGCATGTGGTGCTTTGACAGATTTGGAATATGGTAGAAATATACATTCTATGGCCCTTAAATCTGGAATGAGTCAGGATAACTTTGTTGAAAGTGCTGTTATCGATGTGTACTGTAAGTGTGGAACTGTGGATGAAGCTGCAAAAACTTTTATGAATGTATCTAAAAACAATTTAGTTGCTTGGAATGCCATGGTGATGGGATATGCTCAGCATGGTTGTTATCATGAAGTTTTCGAGCTATTTAATAAGATGCTTGAATTGGGGATACAACCTGATGAGATAACTTATCTTGGAGTGCTTAACTCATGTTGTCATGCAGGGCTAGTGAATGAAGCGCATACTTACCTAAGCTCGATGTTAGAACTTCATGGAGTGGTCCCATGTTTAGAACACTATGCCTGCATGATAGACTTATTTGGACGAGTAGGACTCCTAGAAGATGCAAAGAGGACCATTGATCAAATGCCTATTATGCCTGATGCTCAAATATGGCAGATTCTTCTCTCAGGCTGCAACATCCATGGAAATGTTGATTTGGGGGAAGTTGCAGCAAAGAAGCTTATCGAGCTGCAACCTGAAAATGATTCCGCTTATGTTCTTCTCTCAAATCTCTATGCTTCAGCTGGTAGGTGGAATGCTGTTGGAAAATTGAGAAGGGTAATGAAAAAAAAAATAATCTGCAAGGAACCTGGTTCTAGTTGGATTCAGGTGAGAGGATCTGTGCATTACTTTTTTGCTAGCGATACATCACATCCTGAGAGTAAAGAAATTTATATGAAGCTCCAGAGGTTGTATGAGGAAATGTTTGCTTCACCATATTTGGAACAAGATAGACCTGTAAACTATGATCCAATTCAATTTTGA 2445 42.49 MKGLATHSDALQSIKTLVLKRLYPQALRASASLLHPPLTDQSYALFLKSGFALDAFLSSFIVNRFAISGDFARARRFLLDTPYPDTVSWNSLISGYARFRQPGPVFDLFNGLRRSGLSPDEFSLSSLVKGCGVLEQNEVAHGVCLKMGLLNGFVVSGLLDGYAKLGDVDSAEKCFKEFYIADSVVWTAMVCGFVWNGEFEKGREVFVEMRGLGLGLELNEFSLTSVLGALSDVREGEQVFGLSVKMGLLCGCSIHLNNALMNMYSRCGSKSDAIKMFDEMTEPDVVSWTERIGAAYDAIEAFELFRLVLSGNMEVNEYMLINVLSAMREPKLLKSGRQIQGLCQKAGYLLVASVNNALIFMYGKCGEMVAARHIFDEMLCGDSVSWNSLIAGYAENGLMKQALKVFSQMRDYLLQPNKYTLASILEVAANSNFPEQAMQIHSYIVKLGFIVDDSMLSCLITAYGKCNMICESKRVYSDISQINVLHLNAMAATLVHAGCHADALKLFQTGWRLHQEVDCITLSIVLKACGALTDLEYGRNIHSMALKSGMSQDNFVESAVIDVYCKCGTVDEAAKTFMNVSKNNLVAWNAMVMGYAQHGCYHEVFELFNKMLELGIQPDEITYLGVLNSCCHAGLVNEAHTYLSSMLELHGVVPCLEHYACMIDLFGRVGLLEDAKRTIDQMPIMPDAQIWQILLSGCNIHGNVDLGEVAAKKLIELQPENDSAYVLLSNLYASAGRWNAVGKLRRVMKKKIICKEPGSSWIQVRGSVHYFFASDTSHPESKEIYMKLQRLYEEMFASPYLEQDRPVNYDPIQF* 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 349465 353491 + Vvi2g27 Vvi2g27 782726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g27 814 Pfam PPR repeat family 584 632 IPR002885 -
Vvi2g27 814 Pfam PPR repeat family 84 131 IPR002885 -
Vvi2g27 814 Pfam PPR repeat family 382 425 IPR002885 -
Vvi2g27 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 85 119 IPR002885 -
Vvi2g27 814 Gene3D Tetratricopeptide repeat domain 539 638 IPR011990 GO:0005515
Vvi2g27 814 TIGRFAM PPR: pentatricopeptide repeat domain 87 121 IPR002885 -
Vvi2g27 814 TIGRFAM PPR: pentatricopeptide repeat domain 384 412 IPR002885 -
Vvi2g27 814 TIGRFAM PPR: pentatricopeptide repeat domain 621 654 IPR002885 -
Vvi2g27 814 TIGRFAM PPR: pentatricopeptide repeat domain 184 213 IPR002885 -
Vvi2g27 814 TIGRFAM PPR: pentatricopeptide repeat domain 586 620 IPR002885 -
Vvi2g27 814 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 808 - -
Vvi2g27 814 Gene3D Tetratricopeptide repeat domain 26 148 IPR011990 GO:0005515
Vvi2g27 814 Gene3D Tetratricopeptide repeat domain 149 249 IPR011990 GO:0005515
Vvi2g27 814 Gene3D Tetratricopeptide repeat domain 292 435 IPR011990 GO:0005515
Vvi2g27 814 Pfam E+ motif 768 795 IPR046849 -
Vvi2g27 814 Pfam PPR repeat 356 379 IPR002885 -
Vvi2g27 814 Pfam PPR repeat 558 578 IPR002885 -
Vvi2g27 814 Pfam PPR repeat 258 282 IPR002885 -
Vvi2g27 814 Pfam PPR repeat 184 214 IPR002885 -
Vvi2g27 814 Pfam PPR repeat 659 682 IPR002885 -
Vvi2g27 814 Pfam PPR repeat 156 177 IPR002885 -
Vvi2g27 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Vvi2g27 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 584 618 IPR002885 -
Vvi2g27 814 Pfam E motif 701 763 IPR046848 -
Vvi2g27 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Vvi2g27 814 SUPERFAMILY TPR-like 484 739 IPR011990 GO:0005515
Vvi2g27 814 Gene3D Tetratricopeptide repeat domain 644 798 IPR011990 GO:0005515
Vvi2g27 814 Gene3D Tetratricopeptide repeat domain 436 538 IPR011990 GO:0005515
Vvi2g27 814 PANTHER REPEAT SUPERFAMILY PROTEIN, PUTATIVE-RELATED 1 808 - -
Vvi2g27 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Vvi2g27 814 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 619 654 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g27 - - - vvi:104881090 1637.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g27 Blo02g01116 . . Bda08g00510 Bpe05g00653 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0800 . . . . . . . . . . . Bma05g00825 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016667 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 6