Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g273 ATGGTTACTAGCACCACAAAGTTGTTACTGACAGACATGGTTTTAGGTGTCGACCATGTTCCTTCAAACTACGTTCGACCCCCCTCTGAGCGTCCTAATTTTAAGGATGTCCAGGCGTCAGATGTCTCCATTCCTCTCATAGACCTACAGGACCTCCAGGGTCCTGGCCGCCCTGATGTTGTCAAACAGATTGGCCAAGCCTGCCAACACGATGGTTTCTTCCAGATTAAAAACCATGGGGTGTCCGAGACCATGATCAGTAACATGTTGAGGCTAGCCAGAGACTTTTTCCAGCTTCCAGAAAGCGAGAGGCTCAAGAACTACTCTGACAATCCTTCCAAGACAACCAGGCTCTCCACTAGTTTTAATGTTAAGACAGAAAAGGTAGCCAACTGGAGGGATTTCTTGAGGCTCCATTGTTACCCTCTGGAGGACTATGTCCATGAATGGCCTTCCAATCCTCCAACTTTCAGGGAGGATGTGGCTGAGTATTGCACTAGTACCAGAGAACTAGTACTGAGACTGCTGGAAGCCATTTCTGAGAGCTTAGGCCTTGAGAAAAACTATGTAAAAGGGGTATTAAGCAAGCAGGGGCAGCACATGGCTATGAACTACTATCCACCATGCCCGCAACCAGAGCTGACCTATGGGTTACCTGGACATACTGATCCCAATTTAATCACTGTTCTTCTCCAAGATGATGTGCCTGGGTTGCAGGTCTTAAGGAATGAAAAATGGGTGGCAGTCAATCCTATTCCAAATACCTTCATTATCAACATTGGTGACCAAATGCAGGTAATCAGCAATGATCGATACAAGAGTGTGCTGCATCGAGCTGTGGTGAACTGCAACAAGGACCGGATCTCCATCCCAACGTTCTACTGCCCATCACCAGATGCTGTAATAGGCCCTGCCCCGGAACTAGTCAAGGATGATCGCCCAGCTGTCTATAAGAATTTCACTTACGGGGACTACTACACTCAATTTTGGAACAGGGGGCTTGCAACAGAGTGTTGCTTAGACACGTTCAAAATATCACCCACCTGA 1047 47.37 MVTSTTKLLLTDMVLGVDHVPSNYVRPPSERPNFKDVQASDVSIPLIDLQDLQGPGRPDVVKQIGQACQHDGFFQIKNHGVSETMISNMLRLARDFFQLPESERLKNYSDNPSKTTRLSTSFNVKTEKVANWRDFLRLHCYPLEDYVHEWPSNPPTFREDVAEYCTSTRELVLRLLEAISESLGLEKNYVKGVLSKQGQHMAMNYYPPCPQPELTYGLPGHTDPNLITVLLQDDVPGLQVLRNEKWVAVNPIPNTFIINIGDQMQVISNDRYKSVLHRAVVNCNKDRISIPTFYCPSPDAVIGPAPELVKDDRPAVYKNFTYGDYYTQFWNRGLATECCLDTFKISPT* 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2524249 2527083 - Vvi2g273 Vvi2g273 782972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g273 348 Pfam non-haem dioxygenase in morphine synthesis N-terminal 44 152 IPR026992 -
Vvi2g273 348 Pfam 2OG-Fe(II) oxygenase superfamily 199 296 IPR044861 -
Vvi2g273 348 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 5 342 - -
Vvi2g273 348 Gene3D - 5 327 IPR027443 -
Vvi2g273 348 PANTHER PROTEIN DMR6-LIKE OXYGENASE 2-LIKE 5 342 - -
Vvi2g273 348 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 197 296 IPR005123 -
Vvi2g273 348 SUPERFAMILY Clavaminate synthase-like 14 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g273 K24028 DMR6, DLO; salicylic acid 3-hydroxylase [EC:1.14.11.-] - vvi:100246227 724.546
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g273 Vvi15g602 ECH
Vvi2g273 Vvi16g957 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g273 . . Bda06g01122 . . . . Bma14g00091 . . . . . . . Cpe14g01023 . . . . . . . . Cla10g00077 Cam10g0075 Cec10g0077 Cco10g0081 Clacu10g0075 Cmu10g0921 Cre10g0338 Cone8ag0582 . . . . Csa05g00148 . Cme06g02383 Blo03g00791 . . . . . . . . . . . . . Car16g01165 . . . . . . . . . . . . . . . . Lsi09g00122 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007284 0 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 3 2 1 1 1 1 3 37