Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g274 ATGGTTCCTAGCACCACAAAGTTGTTACTGACAGACATGGTTTTAGGTGTCGACCATGTTCCTTCAAACTACGTTCGACCCCCCTCTGAGCGTCCTAATTTTAAGGATGTCCAGGCATCAGATGTCTCCATTCCTCTCATAGACCTACAGGACCTCCAGGGTCCTGGCCGCCCTGATGTTGTCAAACAGATTGGCCAAGCCTGCCAACACAGTGGTTTCTTCCAGATTCAAAACCATGGGGTGTCCGAGACCATGATCAGTAACATTTTGAGGCTAGCCAGAGACTTTTTCCAGCTGCCAGAAAGCGAGAGGCTCAAGAACTACTCAGACAATCCTTCCAATCCAGTCAGGCTCTCCACTAGTTTTAATGTTAAGACAGAAAAGGTAGCCAACTGGAGGGATTTCTTGAGGCTCCATTGTTACCCTCTGGAGGACTATGTCCATCAATGGCCTTCCAATCCTCCATCTTTCAGGGAGGATGTGGCTGAGTATTGCACCAGTATCAGAGCACTAGTACTGAGACTGCTGGAAACCATTTCTGAGAGCTTAGGCCTCGAGAAGAACTACGTAAGTGGGGTGCTGGGCAAGCATGGGCAGCACATGGCTATGAACTACTATCCGCCGTGCCCGCAACCAGAGCTAACTTATGGGTTGCCTGGACATACTGATTGTAGTTTAATCACAGTTCTTCTCCAAGACGATGTACCCGGGCTTCAGGTTTTAAGAAATGGAAAATGGGTGTCAGTCAATCCTATTCCGAATTCCTTCATTGTCAACATCGGTGACCACATGCAGGTAATCAGCAATGATCGATACAAGAGCGTGCTGCATCGAGCTGTGGTGAACTGCAACAAGGATCGAATCTCCATCCCAACTTTCTACTGCCCATCACCAGATGCTGTAATAGGCCCTTCCCCAGAACTAGTCGACGATGATCACCCAGCTCAGCTTGTTGTGTATATATAA 966 48.14 MVPSTTKLLLTDMVLGVDHVPSNYVRPPSERPNFKDVQASDVSIPLIDLQDLQGPGRPDVVKQIGQACQHSGFFQIQNHGVSETMISNILRLARDFFQLPESERLKNYSDNPSNPVRLSTSFNVKTEKVANWRDFLRLHCYPLEDYVHQWPSNPPSFREDVAEYCTSIRALVLRLLETISESLGLEKNYVSGVLGKHGQHMAMNYYPPCPQPELTYGLPGHTDCSLITVLLQDDVPGLQVLRNGKWVSVNPIPNSFIVNIGDHMQVISNDRYKSVLHRAVVNCNKDRISIPTFYCPSPDAVIGPSPELVDDDHPAQLVVYI* 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2527134 2532638 - Vvi2g274 Vvi2g274 782973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g274 321 Gene3D - 9 319 IPR027443 -
Vvi2g274 321 Pfam non-haem dioxygenase in morphine synthesis N-terminal 44 153 IPR026992 -
Vvi2g274 321 SUPERFAMILY Clavaminate synthase-like 14 315 - -
Vvi2g274 321 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 196 296 IPR005123 -
Vvi2g274 321 PANTHER PROTEIN DMR6-LIKE OXYGENASE 2-LIKE 5 315 - -
Vvi2g274 321 Pfam 2OG-Fe(II) oxygenase superfamily 199 296 IPR044861 -
Vvi2g274 321 PRINTS Isopenicillin N synthase signature 64 81 - -
Vvi2g274 321 PRINTS Isopenicillin N synthase signature 284 302 - -
Vvi2g274 321 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 5 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g274 K24028 DMR6, DLO; salicylic acid 3-hydroxylase [EC:1.14.11.-] - vvi:100251364 654.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g274 Vvi15g602 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g274 . . Bda06g01126 . . . . . . Cmo16g01283 . Cma15g01333 . Car15g01198 . . . . . . . . . . . . . . . . . . . . . Lsi07g01105 . . . Blo03g00789 . . . . Bpe11g00380 . . . . Cmo15g01395 . Cma16g01237 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007284 0 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 3 2 1 1 1 1 3 37