Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g275 ATGGGTGATGGACAAAAAAAAACCGAACTTTACGATGCTTCACAACGCCCATCCTCCTTGAATGAGAGGATCCTCTCATCAATGTCAAGGAGATCGGTTGCTGCTCATCCCTGGCATGATCTTGAGATTGGACCTGGAGCTCCTCAAATTGTCAACTGTGTTGTTGAGATAACGAAAGGAAGTAAAGTTAAGTATGAGCTTGACAAGAAAACTGGGCTGATTAAGGTCGACCGTGTCTTATATTCATCTGTGGTGTATCCTCATAACTATGGATTCATTCCCCGTACCCTATGTGAAGACAATGATCCACTGGATGTTTTAATCCTCATGCAGGAACCAGTTGTTCCTGGCTGTTTTCTTCGAGCCAGGGCCATTGGGCTGATGCCCATGATTGATCAGGGAGAGAATGACGATAAGATCATTGCTGTATGCGCTGACGATCCAGAATATCGACACTACACTGACATCAAAGAGCTTCCACCTCATAGACTAGCTGAGATCCGGCGATTCTTTGAAGACTATAAAAAGAATGAGAACAAGGAGGTTGCCGTGAATGATTTCTTACCTTCAAGTTCTGCTCATCAAGCTGTCCAGCATTCCATTGACCTTTATGCTGAGTATATATTGCAGAGCTTGAGGAGATGA 645 44.03 MGDGQKKTELYDASQRPSSLNERILSSMSRRSVAAHPWHDLEIGPGAPQIVNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLILMQEPVVPGCFLRARAIGLMPMIDQGENDDKIIAVCADDPEYRHYTDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPSSSAHQAVQHSIDLYAEYILQSLRR* 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2536048 2537782 + Vvi2g275 Vvi2g275 782974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g275 214 SUPERFAMILY Inorganic pyrophosphatase 29 209 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vvi2g275 214 CDD pyrophosphatase 49 202 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vvi2g275 214 PANTHER BNAC07G03580D PROTEIN 20 213 - -
Vvi2g275 214 Pfam Inorganic pyrophosphatase 53 204 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vvi2g275 214 ProSitePatterns Inorganic pyrophosphatase signature. 100 106 - -
Vvi2g275 214 Hamap Inorganic pyrophosphatase [ppa]. 49 205 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vvi2g275 214 PANTHER INORGANIC PYROPHOSPHATASE 20 213 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vvi2g275 214 Gene3D Inorganic pyrophosphatase 32 210 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g275 K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] - vvi:100256417 437.187
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g275 Vvi15g599 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g275 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000387 7 6 4 6 6 3 5 2 3 3 2 3 6 3 2 5 3 4 6 2 3 4 2 2 3 2 3 12 11 3 126