Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g277 ATGATTGGGACAAGCTCACATGAGCCCAATCAGATAATACGTGGGTCCCTACGGAGGCACCCACCCAGAGTCAGAAAAATCACGCATATACTGCTTAGCTCTATATCTCTGAAGATCCAGCTAAAATCAGAGATCATGGATTTGCTGCCAGATAGAGATGTAGTGTGTGAACAAGAGCAGGTCATTAGAGGTAAGCAGCTTCCTTTCTCATACTCATCCTCACCCTCCCCATCGTCGTCTTCTTCTCAGTACAGAAACCTTGTTCCCCTCCCCAACGGAGGCGACCGATGGGATGCCCAAATTCAACGGGGTTGGTTGGGTCACCAAGAAGACGGGATGAGATGTTTTGAGGGTGGAGCCGCCTCCAAACTTGAGCTCATGGACACATCGCCTACAAATGATGAGGATGATGTTGTTGATGATGATGTCAGGCGGAGAGATTCCCAAGCCCTAGAGAGAGAGCATATGTTTGATAAGGTCGTGACCCCCAGCGATGTCGGCAAGCTCAATCGCCTTGTTATTCCCAAGCAGCACGCTGAGAAGTATTTCCCGCTTGATTCCTCCGCAAACGAGAAGGGTCTTCTCCTGAATTTCGAGGACCGAAGTGGGAAGCCATGGCGATTCAGATATTCCTATTGGAATAGCAGCCAGAGCTACGTCATGACCAAAGGGTGGAGCCGCTTTGTTAAGGAGAAGAAGCTCGACGCCGGTGACATAGTGTCATTCCAGCGCGGCGTAGGAGAGTCCGGTAAGGATCGATTGTACATCGATTGGAGGCGCCGACCAGATGCGCCGGAGCCCTCATCTCTAGCGCACCACTTCTTCCACCGGTCACCCAACTACATGAGTCATCTCGGTGGACGGAACCCCTACGGCAGTGGCGCATACAGTTACAACAATGCGGTAAACCCATGCTCGGGTTCAGTTTTTTACCTTAGACCCACTGCCCCACAACAGGTTGGAATGGTGCAAGTGCAACAAGGTGGGGTTGAGCCCATGGTATTCAACTCAGTGCCGGTGGTCCACGGGAAAGCTGCAGCCAAGCGGCTGAGGCTGTTTGGCGTAAACATGGAGTGCCCAATATCGGAGTCGGATGAATTGAGTAACAAACTTTCCTCCCTCAGTACATTACTAGCTACTTGA 1143 51.44 MIGTSSHEPNQIIRGSLRRHPPRVRKITHILLSSISLKIQLKSEIMDLLPDRDVVCEQEQVIRGKQLPFSYSSSPSPSSSSSQYRNLVPLPNGGDRWDAQIQRGWLGHQEDGMRCFEGGAASKLELMDTSPTNDEDDVVDDDVRRRDSQALEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRSGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGESGKDRLYIDWRRRPDAPEPSSLAHHFFHRSPNYMSHLGGRNPYGSGAYSYNNAVNPCSGSVFYLRPTAPQQVGMVQVQQGGVEPMVFNSVPVVHGKAAAKRLRLFGVNMECPISESDELSNKLSSLSTLLAT* 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2549059 2551460 + Vvi2g277 Vvi2g277 782976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g277 380 ProSiteProfiles B3 DNA-binding domain profile. 157 262 IPR003340 GO:0003677
Vvi2g277 380 Gene3D - 150 274 IPR015300 -
Vvi2g277 380 CDD B3_DNA 155 251 IPR003340 GO:0003677
Vvi2g277 380 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 122 366 IPR044800 GO:0003700
Vvi2g277 380 SMART B3_2 157 262 IPR003340 GO:0003677
Vvi2g277 380 SUPERFAMILY DNA-binding pseudobarrel domain 154 262 IPR015300 -
Vvi2g277 380 Pfam B3 DNA binding domain 157 261 IPR003340 GO:0003677
Vvi2g277 380 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 122 366 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g277 Vvi15g596 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14576 PF02362 B3 1.80E-29 CL0405 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g277 - - vvi:100266710 610.912