Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g280 ATGAAGAAGAATGGTGTGGACCTGGAGGAAGAGGGTGATGCCGGAGGGTCATCGGTGGAGGTTGTTTCTGGGGATCACGTAACCCTCACCACCATCCTTGTTTCCAATGGCGACTCCCTCGTTCAGGTTGTTGTTTCTGATGGGGACCAACTCTCTCCCAAGAAGCCTCACCTTTCTAGGACTCCCAGTTCTCACGACCAATGCAGAGTTTGCCAGCAGGAGAAGGAAGAAGATTTGATAGATCTTGGATGCCAATGTAGAGGTGGGCTTGCAAAATCTCACCGAACATGTATAGACACTTGGTTTCATACAAAAGGTTCAAACAAATGCGAGATATGCCAACAGGTAGCCTCAAATGTGTCTCCTCCGGAATCCCAACCGAGTGCAAATTACTGGGTTTGGAGGGTTGACCCAAACTTTAGAGGGTCAAATATTGCGCAGGAACAAGCAAGGGGTTGTTTTAAACCACTTTGGGTGGCTTTGTCAATCCTCATTGGCGGTCTTCTGTTGGATGTGCTGATATCAATTGTTCTTGGTGTCTCTGCATTGCCTGTGAACATCATCATTGGTGTTATTGTCGTCCTTGGACTTGGAACTGCAATACGGCTTGCCCTGGAATTTTGCCATGAGTGGAGTTTAAGAAGAGTATCACAGAGAGTAGATACAAATGTGACTCTTGGTTACTATCCTACTTTATCATACACCTGA 708 46.47 MKKNGVDLEEEGDAGGSSVEVVSGDHVTLTTILVSNGDSLVQVVVSDGDQLSPKKPHLSRTPSSHDQCRVCQQEKEEDLIDLGCQCRGGLAKSHRTCIDTWFHTKGSNKCEICQQVASNVSPPESQPSANYWVWRVDPNFRGSNIAQEQARGCFKPLWVALSILIGGLLLDVLISIVLGVSALPVNIIIGVIVVLGLGTAIRLALEFCHEWSLRRVSQRVDTNVTLGYYPTLSYT* 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2577442 2580032 - Vvi2g280 Vvi2g280 782979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g280 235 CDD RING_CH-C4HC3_MARCH 68 114 - -
Vvi2g280 235 SMART ringv_2 67 114 IPR011016 GO:0008270
Vvi2g280 235 PANTHER ZINC FINGER, RING-CH-TYPE 45 231 - -
Vvi2g280 235 MobiDBLite consensus disorder prediction 1 20 - -
Vvi2g280 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 117 IPR013083 -
Vvi2g280 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH11 ISOFORM X1 45 231 - -
Vvi2g280 235 SUPERFAMILY RING/U-box 63 116 - -
Vvi2g280 235 ProSiteProfiles Zinc finger RING-CH-type profile. 60 120 IPR011016 GO:0008270
Vvi2g280 235 Pfam RING-variant domain 68 113 IPR011016 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g280 - - - vvi:100266798 454.136
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g280 . . . . Bpe05g00394 . . . . . . Cma15g01336 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00547 . . . Cmo15g01397 . . . . . . Bhi12g00063 . . Lac11g1863 Hepe06g1415 . Lcy12g1487 . . . . . . . . . . Cme09g01898
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004760 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 4 8 2 42