Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g282 ATGGATATCACCCTCACCACCATCCTTGTTTCCAATGGCGACTCCCGCATTCAGGTTGTTGTTTCTGATGGGGACCAACTCTCTCCCAAGAAACCTCACCTTTCTAGGACTCCCAGCTCTCACGATGAATGCAGAGTTTGTAATGCGGACATGGAAGAAGATTTGATAGAGCTTGGATGCCATTGTAGAGGTTGGCTTGCAAAAGCTCACCGAACATGTATAGATACTTGGTTCCGTACAAGAGGTTCAAACAAATGCGAGATATGCAAACAGGTAGCCGTAAATGTGCCACCTCCAGAGTCGCTGCCGAGTGGGGGTTTTAGACCAGTTTGCGTGGCTTTGACAATCCTCATTTTTGGTCTCCTGCTGGATGTGCTGGTATCAATTGTTTTTGGTGTGTCTTTACTGTGA 411 46.96 MDITLTTILVSNGDSRIQVVVSDGDQLSPKKPHLSRTPSSHDECRVCNADMEEDLIELGCHCRGWLAKAHRTCIDTWFRTRGSNKCEICKQVAVNVPPPESLPSGGFRPVCVALTILIFGLLLDVLVSIVFGVSLL* 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2582737 2584192 - Vvi2g282 Vvi2g282 782981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g282 136 ProSiteProfiles Zinc finger RING-CH-type profile. 36 96 IPR011016 GO:0008270
Vvi2g282 136 Pfam RING-variant domain 44 89 IPR011016 GO:0008270
Vvi2g282 136 CDD RING_CH-C4HC3_MARCH 44 90 - -
Vvi2g282 136 PANTHER ZINC FINGER, RING-CH-TYPE 21 135 - -
Vvi2g282 136 SUPERFAMILY RING/U-box 40 92 - -
Vvi2g282 136 SMART ringv_2 43 90 IPR011016 GO:0008270
Vvi2g282 136 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH11 ISOFORM X1 21 135 - -
Vvi2g282 136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 93 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g282 - - - vvi:100854506 282.722
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g282 . . . Bda08g00749 . . . . . . Cma02g00955 . Car02g00704 Car15g01201 . . . . . . . . . . . . . . . . . . . . . . . Chy09g01350 . . . . . . . . . . Cmo02g00963 . . . . . . . Bhi12g00062 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004760 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 4 8 2 42