Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g287 ATGATTTTCTTATATTTACACAAGCATATCCAAGAAAGAAGAAGCTCTGAATTTGCTTGGAGCAGACAAATTTGTGGTCTCATCAGACGAACAGCAGATGATGCTCTTTCTGAATCACTCGATTTTATAATTGATACCGCATCAGGTGATCACTCATTTGATCCATACTTGTCTCTGTTAAAGACTGTCGGAGTCCTAGTTCTGGTGGGGTCTCCAAGTGAAGCGAAATCCAGTCCTGGAAACCTTGTCAGAGGTATGAGAACTGTTTCTGGTAGCGCTACAGGTGGTACAAAAGATATACAAGAAATGCTTGACTTTTGTGCTGCACATGGAATTCACCCAGAGATCGAAGTAATTCCAATTCAGTATGCAAACGAAGCCCTTGAGAGGCTAATAAAGAAGGATGTGAAGTAG 414 41.06 MIFLYLHKHIQERRSSEFAWSRQICGLIRRTADDALSESLDFIIDTASGDHSFDPYLSLLKTVGVLVLVGSPSEAKSSPGNLVRGMRTVSGSATGGTKDIQEMLDFCAAHGIHPEIEVIPIQYANEALERLIKKDVK* 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2637036 2644475 + Vvi2g287 Vvi2g287 782986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g287 137 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 112 IPR036291 -
Vvi2g287 137 Pfam Zinc-binding dehydrogenase 35 132 - -
Vvi2g287 137 Gene3D - 115 137 - -
Vvi2g287 137 PANTHER - 34 137 - -
Vvi2g287 137 PANTHER ALDEHYDE REDUCTASE 34 137 - -
Vvi2g287 137 Gene3D - 34 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g287 K00083 CAD; cinnamyl-alcohol dehydrogenase [EC:1.1.1.195] - vvi:100244482 177.948
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g287 . . . . . . Bma07g01051 Bma14g00086 . . Cma02g00962 . Car02g00709 . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01356 . Blo03g00785 . Bda07g00164 . Bpe08g00918 . . . . Cmo02g00969 . . . . . . . Bhi12g00056 . . Lac11g1844 Hepe06g1407 . Lcy12g1474 . . . . . . . . . . Cme09g01902
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024519 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2