Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g291 ATGGTAAATTTTTTAGATTTTGCGAAAGCTTCCTCAGTGCCGGCAGATCGAGAGTGCGTTTCATCTAAATTAGTCTTCTGCCGATTCAGTTTTGGATTACATCCTGTTGCTGGTTTTGAACAAGGGAACCGTGAGGAAAGATGTTTGGTTCTAGTAACCCATTTGGGCAGTCATCCAGTAGCCCATTTGGGTCTCAATCAGTTTTTGGGCAGACCAATAATGCTACTACCAATCCTTTTGCCCCTAAACCCTTTGGTAGTACAACCCCTTTTGGCGCACAGACTGGGGGTTCCATATTTGGTGGCACTTCAACTGGTGTGTTTGGTGCAACCCAATCTTCTTCCCCATTGCCTTCCACAGCAACATTTGGCGCTTCTTCATCACCGGCTTTTGGAAGTTCAGTGCCTGCTTTTGGAGCTTCTTCAACTCCTGCTTTTGGTAGTTCATCATCATCATTTGGCGGATCTTCTGTATTTGGGCAGAAGCCTGGTTTTGGAGGTTTTGGGTCCACTCCTACTCAAACAAGTCCTTTTGGAAGTGCTTTTCAACAGTCGCAACCAGCATTCGGAAGCAGTCTATTTGGTTCCTCTACGCCTTTTGGTGCAAGTCAAGCTGCATTCGGTGCTAGTAGCACCCCAGCCTTTGCTGCCACAAGCACACCAGCATTTGGTGCTACCAGCACACCAGCGTTTGGTGCTACTAGCACTTCTGCCTTTGGTTCAACACCAAGTCCAACATTTGGTAGCACAGGCAGTGCATTTGGTGGTTCAGGCGCCCCAGTCTTTGCATCTAGTGGAGCATTTGGCGCTTCAAGCACCCCTTACCCCATCTTTCAGTTTTGGGTCAACTCCAGCATTTGGCCAATCAACTGCTGCATTTGGTAGCAGCCCCTTTGGAACAGCTACTTCTCCTTTTGGAGCTCAAAGCTCTCCATTTGGAGCCCAGGCCACAACGCCAACATTTGGGGGCACTGGTTTTGGGCAGTCAGCTTTTGGGGGTCAACGTGGCGGAAGTAGAGTAGCTGCTTACACACCAACTACTGAAGTAGATAGTGGCAGTGGTACGCAGCCTGTGGGAAAGCTGGAGTCAATATCTGCCATGCCTGTCTACAAAGATAAAAGCCATGAAGAGCTGAGGTGGGAAGACTACCAGTTGGGGGACAAAGGTGGACCAGCTCCTGCTAGTCAGTCTACAGGTGGGGTTGGCTTTGGTGCATCCAACACACAGTCAAATCCTTTTGCTGCTTCACCAGCATTTGGTCAGTCATCTGCTAATCCTTTTTCCTCCTCAACATCTTCAAATCCATTTGCTCCAAGGACTCCAGCCTTTGGCAGTTCTGGCTTTGGAGGCTCATCCACTCCTGCATTCAGTTCATCCCCCTTTGGTGCTTCATCCACATCCAACCCTTTTGGATCAACTTCATCTGCAACACCTTCTATATTTGGAGCATCATCAACCCCTCCATTTGGAGCCAGTTCTTCTCCGTCTCTTTTTGGAGCATCAAGCTCATCAGGCTTTGGGTCATCACCTTCAATTTTTGGTTCCACTCCAGCTCAGGGAACAGCTCCAGCATTTGGTTCTGGCTTAAATTTTGGTAACACTCAATCATCACCATTGTTCCAGTCTTCAACACCTTCTCTTGGGCAGACGGCTTCTGCTTTTGGACAATCTACCTCGGCATTTGGACAGAGCACTACCCCTTCCTTTGGTCAATCAAGCATATTCAACACACCTTCGACTGGGTTTGGGGGAAACTTGTTTTCAAGTGCTCCACCACTACTCTCTACAAGCAACCCTGTGGGTTTCGGTCAAACAACTCCCTCTCTTTCAACACCATTTCAACCTGCTCAACCTGCTCAGACAATTGGTGCTTTTGGCTTTAGCAACTTCGGTCAGACACAAGCAGCTGGTGCAAGTGGCTTTGGTGGGGGGTCAAACATTTTTGGTTCAAATGCCTTTGGACAATCATCTGCTGCTCAAAACTCTGTAGTTGTGCAACCTGCTCCTGCAGCAAATCCTTTTGGAACTCTACCTGCAATGCCTCAAATGTCGATTGGTCGCACTGGAACTGCACCTTCTATTCAATATGGGATTTCTAGCATGCCTGTTGTTGACAAGCCTGCTCCTGTTAGAATATCATCCTTATTGACTTCTCGACACCTCTCTCAAAGGCGGATTAGGTTGCCTGCAAGGAAATATCATCCTAAAAATGATGCTCCAAAGGTGCCATTTTTCAGTGATGATGAAGAAACACCTAGTACACCAAAGGCAGATGCTCTCTTTGTACCCAGGGAGAATCCAAGATCTCTTGTCATTCGCCCAATGGAACAGTGGTCTTTGAGATCTAATGCAGAAAAAACATCTCCATTGAAGGAGGCATCTAAACCAGTACATGAGAATGGTAAAGTGTCTGAAGAAGGATTAAATGGCTCCAATGCTGGTGATAAGGATGCAAATCTTGTTGAAAATGGCCTTGCCAAGGAGCGAATTCATACCATGAAGCCCAACCAGAAACCTAATGGAGTACATGATGATCATTCCATACAAAAAGGTGACTCGTATATCACTCTTACTGGGCACAGAGCTGGTGAGGCAGCCATTGTGTATGAACATGGGGCTGACATTGAAGCACTAATGCCAAAGCTTCGACGCTCTGATTACTACACGGAGCCTCGGATCCAAGAATTGGCAGCCAAGGAAAGGGCTGAACCTGGGTTCTGCCGCCGTGTTAAGGACTTTGTGGTTGGAAGGCATGGCTATGGCAGCATAAAATTCATGGGGGAGACAGATGTGCGGCGGCTTGATCTTGAGTCCCTTGTCCAGTTCAACAATCGAGAAGTGATTGTTTATATGGATGACAGCAAGAAACCTCCTGTTGGACAAGGCCTCAACAAGCCTGCTGAGGTGACCCTTCTAAACATAAAATGCTTTGACAAAAAGACCGGAGTTCAGTATACAGAAGGGCCAAAAATTGGTAAATACAAGGAGATGCTGAAGAGGAAGGCTGAGGACCAAGGTGCTGAGTTTGTGTCCTATGATCCCATGAAAGGAGAATGGAAGTTCAGGGTCAACCATTTCAGTAAATACGAGCTTGGAGATGAAGAGATAGATGACTGGGATATGCATGCTGTCCTGTATTGCTGA 3144 47.17 MVNFLDFAKASSVPADRECVSSKLVFCRFSFGLHPVAGFEQGNREERCLVLVTHLGSHPVAHLGLNQFLGRPIMLLPILLPLNPLVVQPLLAHRLGVPYLVALQLVCLVQPNLLPHCLPQQHLALLHHRLLEVQCLLLELLQLLLLVVHHHHLADLLYLGRSLVLEVLGPLLLKQVLLEVLFNSRNQHSEAVYLVPLRLLVQVKLHSVLVAPQPLLPQAHQHLVLPAHQRLVLLALLPLVQHQVQHLVAQAVHLVVQAPQSLHLVEHLALQAPLTPSFSFGSTPAFGQSTAAFGSSPFGTATSPFGAQSSPFGAQATTPTFGGTGFGQSAFGGQRGGSRVAAYTPTTEVDSGSGTQPVGKLESISAMPVYKDKSHEELRWEDYQLGDKGGPAPASQSTGGVGFGASNTQSNPFAASPAFGQSSANPFSSSTSSNPFAPRTPAFGSSGFGGSSTPAFSSSPFGASSTSNPFGSTSSATPSIFGASSTPPFGASSSPSLFGASSSSGFGSSPSIFGSTPAQGTAPAFGSGLNFGNTQSSPLFQSSTPSLGQTASAFGQSTSAFGQSTTPSFGQSSIFNTPSTGFGGNLFSSAPPLLSTSNPVGFGQTTPSLSTPFQPAQPAQTIGAFGFSNFGQTQAAGASGFGGGSNIFGSNAFGQSSAAQNSVVVQPAPAANPFGTLPAMPQMSIGRTGTAPSIQYGISSMPVVDKPAPVRISSLLTSRHLSQRRIRLPARKYHPKNDAPKVPFFSDDEETPSTPKADALFVPRENPRSLVIRPMEQWSLRSNAEKTSPLKEASKPVHENGKVSEEGLNGSNAGDKDANLVENGLAKERIHTMKPNQKPNGVHDDHSIQKGDSYITLTGHRAGEAAIVYEHGADIEALMPKLRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFMGETDVRRLDLESLVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGVQYTEGPKIGKYKEMLKRKAEDQGAEFVSYDPMKGEWKFRVNHFSKYELGDEEIDDWDMHAVLYC* 1048
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2662966 2685728 - Vvi2g291 Vvi2g291 782990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g291 1047 Gene3D Peptidase S59, nucleoporin 880 1033 IPR036903 -
Vvi2g291 1047 MobiDBLite consensus disorder prediction 304 339 - -
Vvi2g291 1047 PANTHER BNAC05G07920D PROTEIN 272 1036 - -
Vvi2g291 1047 MobiDBLite consensus disorder prediction 384 475 - -
Vvi2g291 1047 MobiDBLite consensus disorder prediction 304 327 - -
Vvi2g291 1047 SUPERFAMILY C-terminal autoproteolytic domain of nucleoporin nup98 877 1033 IPR036903 -
Vvi2g291 1047 PANTHER NUCLEOPORIN 272 1036 IPR037665 GO:0005643
Vvi2g291 1047 MobiDBLite consensus disorder prediction 399 475 - -
Vvi2g291 1047 MobiDBLite consensus disorder prediction 734 759 - -
Vvi2g291 1047 MobiDBLite consensus disorder prediction 781 816 - -
Vvi2g291 1047 ProSiteProfiles NUP C-terminal domain profile. 884 1026 IPR007230 GO:0005643|GO:0006913|GO:0017056
Vvi2g291 1047 Gene3D - 337 388 - -
Vvi2g291 1047 Pfam Nucleoporin autopeptidase 885 1031 IPR007230 GO:0005643|GO:0006913|GO:0017056
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g291 K14297 NUP98, ADAR2, NUP116; nuclear pore complex protein Nup98-Nup96 - vvi:100249633 1409.82
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g291 . . . Bda08g00748 Bpe05g00397 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00548 Bma12g00417 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003607 3 2 2 2 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 2 1 1 1 1 1 1 2 3 1 45