Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g292 ATGCATGGCCACCTCTTGCCCATATCTGCACCATCTTCAAGCCCACCTCTCTTTCTCTCTTTCCCTCTTGGAGCTCCCTCTCTGGCCGCCTCGTACTCGGTGAGTTTCTACAGACGGCGGTCGGAGGAGGTAGAGTGCGTAGCCGAGGAAGCAGTTGTGATGCACAGGGGAGGAGGAGATGTGGGTATGGCAACGCGGGGCAGAAAGAAAACGTCGTCGAGGGGACACCATAGGTTTGTGGGAGTTAGGCAGAGGCCGTCAGGGAGATGGGTGGCGGAGATCAAGGACTCGTTGCAGAAGGTTAGGCTTTGGCTTGGAACGTTTGACACTGCGGAGGACGCGGCCCGCGCTTATGATCAAGCCGCTCGCTCTCTACGAGGTGCCAACGCCCGCACCAACTTTGAATTACCGCCCTCGTCTGATTCCAGCGACTGTGATGTCAACGGCAATTGTATGGCGGATGGGGTTGAGCCCTTCTCTTTTGACCAATTCTGTGCGACGCAAGTTGATGGACTGCTCGGCGCACTCAGGGCCAAGCTGCTTGACGGCAAGGGTTTGCAGGGGCACCCTGCCGCTGTTGTTGGCTCGCCCCACAACAGCATCGGCACACCCAAGAGAGAGGTATCTATGCCAGCAGGGATTGTGAATCCCATGCTGCTACAGGGTCCTAGTTATTCTCCCGCAAGTAAGGCTCCTGGGCTTCTCCTTGATCATCATGATAATGAGGTGGAATCAGGTCAGGCTGGGGTACAGTGGCAAAGCATTTACCAAATTGCATCGCCCCAATTGCCTTGGTCCTTACAGCCACAGATGAACCCTGTCCATGAGGGTGGCTTGTTTTGTACTACCACCACTGCCCCTGCTATTACAACTATATGGCCAACTTCAGCAACAACCGTAGCCACCAGTGATTTTCCATATTCGGAACAGGGCAGCCATGATGATTTGCCAAGTAATAAGAAGAGGAAAGTGGATGGATCAACCATGCCCTTGTTCCAAATCAATGGAGCAACTCAAGGAGTTTGGCCCTCTGAGCAGCAACTTCTGCACTGTGACAATGGCTCTTGGGACCCTCTCCTCTATGTATCATCTGTGCTAGACAGGAGGGTCCTTCCTGTGACTCCTAGTTTGCTGAAGTGGATGGCTGGATTGAAGAGTTTCGACACATGGAGCCCTGTTATTGTAATGTTAGCTGTTGATTTTGCCTTCGCGGTTGTAAATATACTTCTCAAGGAAGTCCTCAATGCAGAAATGAACCATTTGGTCCTCATCACATACCGGCAATCAATTTCTACCATTTTCTTGGTCCCCATTGGATACTTTTGGGAAAGGAATAGCCGACCCAAGCTCACACTTCGGATCTTATGTTACCTCTTCTTCAGCGCTCTTGTCGGGGCATCACTGACACAATACTTCTTCCTTCTTGGGATTCAATACACATCTGCTACTTTCGCATGTGCTTTTATCAACATGGTCCCTGCAATCACATTTATAATGTCATTACCTTTTGGATTAGAGATTGTGAACATAAAAACCAACAGGGGGAGAGCAAAATTAATTGGAACCTTGGTATGTATCTGTGGAGCCATGATACTGACTCTTTACAAAGGAATGCCTTTAGTTAAATATTCGCGTCCAGAAGCTCCATCTCCAACCATGGATCAGGCTATCAGCTTGAGCTCGGGTAAGAAGACAGAGAGATGGACCGTTGGCTCAATAGCTTTGATGGGAGGCACCCTGTTGTGGTCTTCATGGTTTCTTATTCAGTCAAACATTGGCAAGCTATACCCATGTCAGTATTCGAGCACTGCCATCATGTCCTTCTTTGGTGCCATTCAATCAGCAGTCATTAGTTTGTCCATGGACAGAAACCTTTCCTTGTGGATTCTGAAAGGGAAAACAGAAATATTAACAGTTATTTATGCTGGAGTGGTAGGGTCTGGCTTATGCTATGTGGCAATGTCATGGTGTGTCAAGAAGAGGGGCCCTGTCTTCACTGCAGCATTCAGTCCCCTGGTTCAGATAATGGCAGTCATGTTTGATATCCCTATTCTGCATGAGCAACTCCATCTTGGAAGTGTGCTAGGATCGGCCACTGTAATTGCTGGATTATACATTCTTTTGTGGGGTAAGAAGAAGGATGCAGAGAATTCCTCAATGGAACTAGTCCAAGAAGCTGAAGAAGTTAAGGACCAAGAGGCACAGTTACAAGTAACCACAATCACGAGTGGTTCAAGGTGCCCCTGA 2247 48.91 MHGHLLPISAPSSSPPLFLSFPLGAPSLAASYSVSFYRRRSEEVECVAEEAVVMHRGGGDVGMATRGRKKTSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDQAARSLRGANARTNFELPPSSDSSDCDVNGNCMADGVEPFSFDQFCATQVDGLLGALRAKLLDGKGLQGHPAAVVGSPHNSIGTPKREVSMPAGIVNPMLLQGPSYSPASKAPGLLLDHHDNEVESGQAGVQWQSIYQIASPQLPWSLQPQMNPVHEGGLFCTTTTAPAITTIWPTSATTVATSDFPYSEQGSHDDLPSNKKRKVDGSTMPLFQINGATQGVWPSEQQLLHCDNGSWDPLLYVSSVLDRRVLPVTPSLLKWMAGLKSFDTWSPVIVMLAVDFAFAVVNILLKEVLNAEMNHLVLITYRQSISTIFLVPIGYFWERNSRPKLTLRILCYLFFSALVGASLTQYFFLLGIQYTSATFACAFINMVPAITFIMSLPFGLEIVNIKTNRGRAKLIGTLVCICGAMILTLYKGMPLVKYSRPEAPSPTMDQAISLSSGKKTERWTVGSIALMGGTLLWSSWFLIQSNIGKLYPCQYSSTAIMSFFGAIQSAVISLSMDRNLSLWILKGKTEILTVIYAGVVGSGLCYVAMSWCVKKRGPVFTAAFSPLVQIMAVMFDIPILHEQLHLGSVLGSATVIAGLYILLWGKKKDAENSSMELVQEAEEVKDQEAQLQVTTITSGSRCP* 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2708195 2718224 + Vvi2g292 Vvi2g292 782991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g292 748 ProSiteProfiles AP2/ERF domain profile. 78 135 IPR001471 GO:0003700|GO:0006355
Vvi2g292 748 Pfam AP2 domain 78 127 IPR001471 GO:0003700|GO:0006355
Vvi2g292 748 SUPERFAMILY Multidrug resistance efflux transporter EmrE 426 536 - -
Vvi2g292 748 PANTHER WAT1-RELATED PROTEIN 392 738 - -
Vvi2g292 748 CDD AP2 78 135 IPR001471 GO:0003700|GO:0006355
Vvi2g292 748 Coils Coil 712 735 - -
Vvi2g292 748 SMART rav1_2 78 141 IPR001471 GO:0003700|GO:0006355
Vvi2g292 748 PRINTS Ethylene responsive element binding protein signature 79 90 IPR001471 GO:0003700|GO:0006355
Vvi2g292 748 PRINTS Ethylene responsive element binding protein signature 101 117 IPR001471 GO:0003700|GO:0006355
Vvi2g292 748 PANTHER WAT1-RELATED PROTEIN 392 738 IPR030184 GO:0016021|GO:0022857
Vvi2g292 748 Gene3D AP2/ERF domain 77 136 IPR036955 GO:0003700|GO:0006355
Vvi2g292 748 SUPERFAMILY Multidrug resistance efflux transporter EmrE 633 713 - -
Vvi2g292 748 Pfam EamA-like transporter family 391 533 IPR000620 GO:0016020|GO:0016021
Vvi2g292 748 Pfam EamA-like transporter family 571 708 IPR000620 GO:0016020|GO:0016021
Vvi2g292 748 SUPERFAMILY DNA-binding domain 79 135 IPR016177 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g292 - - - vvi:100265040 726.472
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g292 . . . . . . . . . . . . . Car15g01210 . . . . . . . . . . . . . . . . . Cone8ag0576 . . . . . . . . Blo19g00123 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002262 1 2 2 2 2 2 3 2 2 2 1 2 2 2 2 3 2 2 2 2 2 2 1 2 1 3 3 2 1 3 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14578 PF00892 EamA 9.90E-13 CL0184 Vvi TF