Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g296 ATGCAGCAAGGAGGGTCTCAATATGGAGTGTCATCGGAGATGACTCCCTTCGCTGCGACTACCACTACCACTAGTACAAGAACCCACGTCTTGGGAGGTGCCGACCAGCAGCAGCAGCAGCTGAAATTGGGGGATCCAACACTTGCAGTGGCAGAAGAGGCCTCCCCCATCAGCAGCCGTCCTCCAGCTCATTCGTCTGCTGGGAATTTCGATGAGTTCTTGCCAGTGGGCGGTGGATTGCCGGATGAGGATGCTCTCGCCGCCGGGGATGAAGGCGATCGAGGGGGCGTTGCAAGTGGCAACAGGTGGCCGCGTCAAGAGACTTTAGCCCTTCTCAAGATTAGGTCGGAGATGGATGTGGCTTTCCGTGACGCCACCCTCAAAGGCCCTCTCTGGGAAGATGTCTCCAGGAAACTAGCAGAGCTGGGATACTCGAGAAGTGCCAAGAAGTGTAAGGAGAAGTTTGAAAACGTTCACAAATACTACAAAAGAACAAAGGAAGGGCGGGCTGGTAGGCAAGATGGAAAAAGCTACAGGTTTTTCAGTCAGCTTGAGGCTCTACACAGCACCGCTACCAGCAACGTCAACCCTATGCCAGTTTCATCTGTTAGGATTCCCTCTGCAAGCCCTTCTACTATGGGTGCCTCCCCGATGTTTCCTCCTGATCTGAGCTCCGGAATGATTACCGCCCCTTCTGGATCCGCTGCCGCTACTGCCCCGGCTGCTGCACCGACACACACTGCTCTAGGGATCAGCTTCTCATCTAATACTAGCAATAGCCGTCGGATGATGGATTTCTTCGAAAGTCTAATGAAACAGGTGATGGAGAAGCAGGAGGTGATGCAGCAAAGGTTTCTAGAGACCATAGAGAAGAGAGAACAAGACAGGATGATCAGAGAAGAGGCTTGGAAGAGACAGGAGATGGCCAGACTCCCCACCGGCACCTTAGTGATGGCTATACCAGAACAACAGGTACCACCCCAGGACATCAGTAGTGGTGGTGGGAGCTTAGAGTCGAGCTCATCGAGGTGGCCCAAAACGGAAGTTCTTGCATTAATAAACTTGAGGAGCGGACTGGACTCCAGGTACCAAGAGGCAGGACCAAAGGGTCCTCTTTGGGAAGAAATCTCAGCAGGAATGCAACAGATGGGGTACAAAAGGAGTGCCAAGAGATGCAAGGAAAAATGGGAGAATATCAATAAGTACTTCAAGAAGGTGAAGGAAAGCAACAAGAAACGCCCCGAGGATGCCAAGACTTGCCCTTACTTTCATCAACTAGATGCACTCTACAGGAAAAAGCTACTGGGAAGCACTAGTGGCAGTGGTGGCAGTGGTGGCAGTACTTATGTTAACCCCAATAGGCCAGAAGAGCAGCAGCAGCAGCAGCCGCCGCCTCAACATGAGAGCGCAAAATTGGATCCAATTCCAACTCCATATTCTCAGGATAGAGCAGCACTCCTGGGGGAGGAGCTAAGAAGCCAGAAGACATTGTGA 1494 52.07 MQQGGSQYGVSSEMTPFAATTTTTSTRTHVLGGADQQQQQLKLGDPTLAVAEEASPISSRPPAHSSAGNFDEFLPVGGGLPDEDALAAGDEGDRGGVASGNRWPRQETLALLKIRSEMDVAFRDATLKGPLWEDVSRKLAELGYSRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKSYRFFSQLEALHSTATSNVNPMPVSSVRIPSASPSTMGASPMFPPDLSSGMITAPSGSAAATAPAAAPTHTALGISFSSNTSNSRRMMDFFESLMKQVMEKQEVMQQRFLETIEKREQDRMIREEAWKRQEMARLPTGTLVMAIPEQQVPPQDISSGGGSLESSSSRWPKTEVLALINLRSGLDSRYQEAGPKGPLWEEISAGMQQMGYKRSAKRCKEKWENINKYFKKVKESNKKRPEDAKTCPYFHQLDALYRKKLLGSTSGSGGSGGSTYVNPNRPEEQQQQQPPPQHESAKLDPIPTPYSQDRAALLGEELRSQKTL* 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2746468 2750881 - Vvi2g296 Vvi2g296 782995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g296 497 MobiDBLite consensus disorder prediction 437 467 - -
Vvi2g296 497 CDD GT1 343 407 - -
Vvi2g296 497 MobiDBLite consensus disorder prediction 1 101 - -
Vvi2g296 497 Pfam Myb/SANT-like DNA-binding domain 101 187 IPR044822 -
Vvi2g296 497 Pfam Myb/SANT-like DNA-binding domain 342 429 IPR044822 -
Vvi2g296 497 CDD GT1 101 166 - -
Vvi2g296 497 ProSiteProfiles Myb-like domain profile. 336 400 IPR001005 -
Vvi2g296 497 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 51 257 - -
Vvi2g296 497 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 319 452 - -
Vvi2g296 497 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 260 311 - -
Vvi2g296 497 Gene3D - 103 164 - -
Vvi2g296 497 Gene3D - 344 405 - -
Vvi2g296 497 MobiDBLite consensus disorder prediction 435 497 - -
Vvi2g296 497 PANTHER - 51 257 - -
Vvi2g296 497 PANTHER - 319 452 - -
Vvi2g296 497 PANTHER - 260 311 - -
Vvi2g296 497 ProSiteProfiles Myb-like domain profile. 101 159 IPR001005 -
Vvi2g296 497 MobiDBLite consensus disorder prediction 1 44 - -
Vvi2g296 497 SMART sant 340 402 IPR001005 -
Vvi2g296 497 SMART sant 99 161 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g296 - - - vvi:100247896 529.25
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g296 . . . . . . . . . . Cma02g00969 Cma15g01346 Car02g00715 Car15g01214 . . Cpe05g00748 . . . . . . . . . . . . . . Cone8ag0572 Cone12ag0575 . . . Csa05g00132 Chy09g01362 . . . . . . . . . . Cmo02g00975 Cmo15g01408 Cma06g00453 . . . . . Bhi12g00049 . . Lac11g1813 . . . Cla01g00116 Cam01g0118 Cec01g0118 Cco01g0119 Clacu01g0115 Cmu01g0116 Cre09g2389 Lsi09g00104 . . Cme09g01908
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006703 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 5 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14579 PF13837 Myb_DNA-bind_4 8.00E-23 CL0123 Vvi TF