Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g299 ATGGCCGCAGTCAAGATCCACAATGGCGGAGAGCGTCTCAACAGAGTATTCAAGCAGGAACTGGAGATCCTGCTCCACCTTGACCATGACAACATTGTCAAGCTTCTGGGTTACGGCGATGATCGAGAAGAAGGGGTCTTGGTATTTGAGCATGTTCCAAAGGGGAGCTTGCAAGAGATGCTCCATGACAGTACCGGAGCAAAGGAGAACTCGCCGCTATCATGGAAAAACCGAATGGCCATAGCCTTCCAGCTTGCCGAAGCTATTGAATATCTACATGAAAAATGTGCTCTCCCAATCGTTCACGGCGACATCAAAGCCTCAAACATCCTCCTGGATGAGCACCTCAACTGCAAGCTCTGCGATTTCGGGTCTGCCAAGATGGGATTTTCTTCCACGGTGCTGCCGCCCTCTTCTTCTCGGATGAACCAAGTCATGATGATGGGGTCTCCTGGCTACGTTGATCCTCACTACCTGAGAACCGGAATCCCCTCAAAAAAGAACGATATTTATAGCTTTGGAGTCATCCTTCTGGAACTGCTCACTGGGATGGATGCCTTCTGTTCAGAGCGGGAGCAGCCGCTGACATCTATTGCCGGGCCCATTCTCAGGGATGCCAGCCAGGTGGGCAAAGTGGTAGATCCAGGACTTGGCGGCTACTTTGACTTGGAAGAAGCCAAAGTCATGGCTTCCATGGCAGGACTCTGTCTGGGTCCTTCACCTACCCTAAGGCCCTCCGCCTCTGACATCCTTCAAACAATGAAACACAAAATCTCTTCCATCTCCTTCCTATTCTCACCTCACCATTTGAAATTAGCCAGTTTGATTCAGCATCCAAAATTCTATCTTGAATGGAAAGATAAAACCTTCAGTAGCATTTCTTCTACGTTTGCTGCGAGTTCAAGGACGAGAAACCGCCGACGGGTGTCTGTTTCCACCCATTTTTGCTGCAACTCTCTACTTTCCGATCTTGCCCCTGCCACCTCTGCAGCCTACGGTGCTATGCTCCTCGGCGGCGGCGTCTTTGCCTATACAAGATCTGGGAGCAAGGGCTCACTTTTTGGAGGATTTACAGGAGCAGCACTAATGGCAACGGCTTACCTTCTTATGCAAGTCCCCAAGACAAAAGACATAGGTGACGCCCTCGGGTTTGGATCAGCTTTCCTTTTCTCTTCTGTATTTGGTATACGATTAGCGGCCACTCGTAAACTAGTCCCTTCAGGCCTGTTGTTAGGACTTTCCATCTTTGCATTGACTGTGTTTATCTCTGCCTATCTACAAGATATCTCTGATCCACTACATGTCTCCTAA 1311 49.35 MAAVKIHNGGERLNRVFKQELEILLHLDHDNIVKLLGYGDDREEGVLVFEHVPKGSLQEMLHDSTGAKENSPLSWKNRMAIAFQLAEAIEYLHEKCALPIVHGDIKASNILLDEHLNCKLCDFGSAKMGFSSTVLPPSSSRMNQVMMMGSPGYVDPHYLRTGIPSKKNDIYSFGVILLELLTGMDAFCSEREQPLTSIAGPILRDASQVGKVVDPGLGGYFDLEEAKVMASMAGLCLGPSPTLRPSASDILQTMKHKISSISFLFSPHHLKLASLIQHPKFYLEWKDKTFSSISSTFAASSRTRNRRRVSVSTHFCCNSLLSDLAPATSAAYGAMLLGGGVFAYTRSGSKGSLFGGFTGAALMATAYLLMQVPKTKDIGDALGFGSAFLFSSVFGIRLAATRKLVPSGLLLGLSIFALTVFISAYLQDISDPLHVS* 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2774653 2783052 + Vvi2g299 Vvi2g299 782998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g299 436 Pfam Transmembrane proteins 14C 329 420 IPR005349 GO:0016020
Vvi2g299 436 PANTHER BNAA02G22020D PROTEIN 2 264 - -
Vvi2g299 436 Gene3D - 325 428 IPR044890 -
Vvi2g299 436 Gene3D Phosphorylase Kinase; domain 1 1 55 - -
Vvi2g299 436 ProSiteProfiles Protein kinase domain profile. 1 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g299 436 Gene3D Transferase(Phosphotransferase) domain 1 56 263 - -
Vvi2g299 436 Pfam Protein kinase domain 13 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g299 436 SMART serkin_6 1 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g299 436 SUPERFAMILY Protein kinase-like (PK-like) 2 257 IPR011009 -
Vvi2g299 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 100 112 IPR008271 GO:0004672|GO:0006468
Vvi2g299 436 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 2 264 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76535 PF00069 Pkinase 3.20E-35 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g299 - - vvi:100258149 817.764