Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g300 ATGGCGGAAGCAGAAACTGGTACGCCGACAGCGTCGGCGCCGGCGACGCCTGGAACACCCGGGGGCCCATTGTTTTCGTCGCTCCGAGTCGATTCGCTGTCCTACGATCGTAAGTCAATGCCGCGATGCAAGTGCCTGCCGGTTGGGGCCGCCTCGTGGGCTCCATCTCCTACCTGTTTCACAGATTTTCCTGCGCCCGACGTCTCTCTCACCCGGAAGCTTGGAGCAGAGTTTGTGGGAACGTTCATCTTGATATTTGCAGCGACGGCGGGACCCATCGTGAACCAGAAGTACAGTGGGGTGGAGACTCTGATAGGGAATGCGGCATGCGCCGGGCTTGCGGTGATGATAGTGATTCTTTCCACAGGCCATATCTCAGGAGCTCACCTCAACCCCTCCCTCACGATTGCCTTCGCCGCGCTTCGTCACTTCCCGTGGGTGCAAGTTCCGGCCTATATCGCAGCACAAGTTTCAGCATCCATCTGCGCTTCCTTCGCTCTCAAGGCTGTTTTCCACCCATTCATGTCTGGTGGTGTCACCGTCCCTTCGGTCAGCATTGGGCAGGCCTTCGCCCTTGAGTTCCTTATCACTTTCAATCTCTTGTTCGTTGTCACCGCCGTCGCCACGGATACTCGAGCTGTGGGGGAATTGGCTGGTATAGCGGTTGGAGCTACTGTTATGCTGAACATTCTTGTGGCAGGGCCGTCGAGTGGTGGTTCGATGAATCCAGTGAGGACTCTGGGGCCGGCCGTGGCAGCAGGGAATTACAGGGCGATATGGATATATCTGGTGGCTCCAACGCTGGGGGCGGTGGCGGGGGCAGCTATCTACACAGCTGTCAAACTCCGAGCGGATGAGGGTGAGCAACCTCGCCAGGTCAGGAGCTTCCGTCGCTAG 897 58.31 MAEAETGTPTASAPATPGTPGGPLFSSLRVDSLSYDRKSMPRCKCLPVGAASWAPSPTCFTDFPAPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYSGVETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWVQVPAYIAAQVSASICASFALKAVFHPFMSGGVTVPSVSIGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSSGGSMNPVRTLGPAVAAGNYRAIWIYLVAPTLGAVAGAAIYTAVKLRADEGEQPRQVRSFRR* 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2788378 2791515 + Vvi2g300 Vvi2g300 782999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g300 298 MobiDBLite consensus disorder prediction 1 24 - -
Vvi2g300 298 Gene3D Glycerol uptake facilitator protein. 65 293 IPR023271 -
Vvi2g300 298 PANTHER AQUAPORIN NIP5-1 ISOFORM X1-RELATED 9 296 - -
Vvi2g300 298 PANTHER AQUAPORIN NIP2-1 9 296 IPR034294 -
Vvi2g300 298 ProSitePatterns MIP family signature. 129 137 IPR022357 -
Vvi2g300 298 PRINTS Major intrinsic protein family signature 72 91 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi2g300 298 PRINTS Major intrinsic protein family signature 111 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi2g300 298 PRINTS Major intrinsic protein family signature 148 167 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi2g300 298 PRINTS Major intrinsic protein family signature 192 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi2g300 298 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi2g300 298 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi2g300 298 Pfam Major intrinsic protein 68 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi2g300 298 SUPERFAMILY Aquaporin-like 69 283 IPR023271 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g300 K09874 - vvi:100265051 555.829