Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g301 ATGGCTCGGTTGATTCTTCCGTGTAAAGGTTCGGGTTTGGCAAGGACGGGTCTTTTGGGTTTGATCTCCTCTGCTCCTCTCCAAGCCCCGTGTTGTGTTAGTTCCCTTAAACATTCAGCAAAGAATATCTCTAGATATAGGCAATCTCTTAACTTAGAGGTTTCACATCGGAGAAATTACCGGTTTCCTCATCCATCATTATATAGGGCTAAGCAAGTCAGCAGGAGGTTTGTCTGCTCAGTTGCAACAGAAAGCTCACCAAAGCAAGTTGAAGAATCCAAAATGGATATGCCAAAAGAAATCTTCCTGAAGGATTACAAGCTTCCTGATTACTACTTTGATACGATGGATTTGAATTTTTTGTTGGGTGAGGAGAAAACAACTGTCTATTCAAAAATAACTGTCTTACCCAGAGTTGAAGGTTCTCCTTTCCCACTGGTATTGGATGGGGTAGATCTGAAGCTTGTTTCAGTAAAGGTCAACAGCAAGGAACTTAAGGAAGAAGATTACGTCCTGAGCCCCCGCCATCTGACACTTCCATCACTTCCAAGTGGTGAATTTACTCTGGAAATTGTTACTGAGATATGTCCACAAAAGAACACATCATTAGAGGGCCTTTACAAGTCATCTGGGAATTTCTGTACACAATGTGAAGCAGAGGGTTTCCGAAAAATTACATTCTATCAGGATCGCCCTGATATTATGGCAAAATACACATGCCGCATTGAAGGTGATAAGTCATTATACCCGGTATTGTTGTCTAATGGAAATCTCATAGAGCATGGAGACCTTGAGGGTGGCAAACACTATGCCATTTGGGAGGACCCCTTCAAGAAACCTTGTTACTTATTTGCTTTAGTTGCTGGACAGTTGGAAAGCAGAGATGACACTTTTGTTACCCGTTCAGGCCGAACTGTATCCTTGAGGATCTGGACCCCAGCACAAGATGTACCCAGGACTGTCCATGCCATGTATTCCCTTAAAGCAGCCATGAAATGGGATGAGGATGTTTTTGGTCTTGAGTATGACCTGGATCTGTTCAATATTGTGGCAGTTCCAGATTTTAACATGGGAGCCATGGAAAACAAAAGTTTGAATATTTTCAATTCCAAGCTTGTCTTGGCATCTCCAGAAACTGCTACGGATGCAGATTATGCAGCAATTTTGGGAGTTATTGGTCATGAGTATTTCCACAACTGGACTGGTAACAGAGTGACATGTCGTGACTGGTTCCAGCTCAGCTTAAAGGAAGGTCTTACAGTTTTCCGTGATCAGGAATTTTCATCTGACATGGGAAGCCGCACAGTAAAGCGAATTGCTGATGTTTCAAGGCTTCGAAATTATCAATTTCCACAGGATGCTGGTCCGATGGCACATCCTGTACGGCCACATTCTTACATCAAGATGGACAACTTCTACACAGGTAAGTTTGTGTTTTCTGTGATTTGA 1449 42.65 MARLILPCKGSGLARTGLLGLISSAPLQAPCCVSSLKHSAKNISRYRQSLNLEVSHRRNYRFPHPSLYRAKQVSRRFVCSVATESSPKQVEESKMDMPKEIFLKDYKLPDYYFDTMDLNFLLGEEKTTVYSKITVLPRVEGSPFPLVLDGVDLKLVSVKVNSKELKEEDYVLSPRHLTLPSLPSGEFTLEIVTEICPQKNTSLEGLYKSSGNFCTQCEAEGFRKITFYQDRPDIMAKYTCRIEGDKSLYPVLLSNGNLIEHGDLEGGKHYAIWEDPFKKPCYLFALVAGQLESRDDTFVTRSGRTVSLRIWTPAQDVPRTVHAMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETATDADYAAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRTVKRIADVSRLRNYQFPQDAGPMAHPVRPHSYIKMDNFYTGKFVFSVI* 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2793847 2803836 + Vvi2g301 Vvi2g301 783000

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g301 482 PANTHER BNAC06G01820D PROTEIN 59 478 - -
Vvi2g301 482 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 99 289 IPR042097 -
Vvi2g301 482 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 301 474 - -
Vvi2g301 482 Pfam Peptidase family M1 domain 325 473 IPR014782 GO:0008237|GO:0008270
Vvi2g301 482 Gene3D Neutral Protease Domain 2 377 479 IPR027268 -
Vvi2g301 482 Gene3D tricorn interacting facor f3 domain 108 291 IPR042097 -
Vvi2g301 482 PRINTS Membrane alanyl dipeptidase (M1) family signature 223 238 IPR001930 GO:0006508
Vvi2g301 482 PRINTS Membrane alanyl dipeptidase (M1) family signature 273 288 IPR001930 GO:0006508
Vvi2g301 482 PRINTS Membrane alanyl dipeptidase (M1) family signature 355 365 IPR001930 GO:0006508
Vvi2g301 482 PRINTS Membrane alanyl dipeptidase (M1) family signature 391 406 IPR001930 GO:0006508
Vvi2g301 482 PRINTS Membrane alanyl dipeptidase (M1) family signature 410 422 IPR001930 GO:0006508
Vvi2g301 482 Gene3D - 293 376 - -
Vvi2g301 482 CDD M1_APN 105 474 - -
Vvi2g301 482 Pfam Peptidase M1 N-terminal domain 181 283 IPR045357 -
Vvi2g301 482 PANTHER - 59 478 IPR012779 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g301 K01256 pepN; aminopeptidase N [EC:3.4.11.2] - vvi:100263283 966.837
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g301 . . . . . . Bma07g01667 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00268 . . . . . Bda09g00030 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004484 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 2 1 2 1 1 1 1 2 1 2 42