Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g304 ATGAAAAAAAAAAAAAAAACGGAAATTCAGCGACCCCTATTGTTGACCATAGAATCCTTTGACCTTCTAGAGACCCTCCAATACTTGCCGGCGTCGGCCCAGATCGGATTTCCCTTCATCGACCGAGACCCGGACTTGTTTTCAATCCTTCTGTCTTTGCTTCGTACTGGTAATCTTCCGTCAAAGGCCAAAGCTGTTGATCTCCAAGACCTCTTTTCGGAAGCCAAATTCTATGGTATTGAGAGCCTTCTCGTCTCTTCTCTATCTAACCCATCTCAGTTCGACGCCTTCAATCTTGAGAAATCGCTGATTTTGCCGTTGAACGGCAGGGATTCGCCGTCGGCGATATCGACCACAATGTTCGGGTCAGTGCATGTGGCGCATGGCTCTAAGATCACGTCTTTTGATTGGTCTCTGCAGAGGAAATCCACAATTTTGACGCGGTTCTCCGCCGTCGACTCTCTCCTCGCTTTATCGCCGTCAGTGGCGGCTGCCGGGGCCACCGACTTTTCGGGTTTGCAGATTCTCGATCTCGAAAACGGGTATGTGAAAGAGACCTTGAATTGGGAAAACGTGACCAGGTCTAGTTCAACAGTTCAAGCAATTGGGTCCTCCCCTAAATTCTTGTTCACTAGTTTTGAATCGGGCAGGCGAAATTCAAATTCGATCGTTGTTTTTGACATCGAAAACTTGAAGCCGGTTTCTGAAATTGGTACTAATGAAATTTATGGTGCTGATCTCGATTCAGGCATTCCCGCAACGAAATTGAGTTGGATTTCGGATTATAATCTGTTAATGGCCTCTGGATCTCATAGTGGGCCTTCAGGAGTATGCGGCAACATCAAATTATGGGATGTGAGGTCTGGAAATTTAGTATGGGAATTGAAGGAGAAAGTAGATTGCTTTTCAGATGTCACGGTTTCGGAAAACTTGTCTGCAATTTTCAAAGTTGGTGTGAATTCAGGGGAGGTGTTCCTCATGGATTTAAGAAATCTTGGTGCTATGAATACATGGGTTCCCACCGGGGAGACGAGAAGGGTGGTTAATGGGAAAAAAGAAGGTGTCGGGTGTAAGATTGGAAGCCATGGGAATCAAGTTTTTTGTAGTAAGGGAGGGAATTTGGAGTTATGGTCTGAGGTTTTCATGGGTTCTACGATAAAGATTGCAGAGATGGTCTTGGCCCCTACTGAAAAGGTGGTTTTAGGCTCAATAGCCTTTGCAATCTTCTGGGTTTTGGCAGTGTTCCCAGCAGTTCCTTTTCTACCCATTGGTAGGACTGCAGGGTCTCTCCTAGGAGCCATACTCATGGTCATCTTCAGGGTCATAACCCCAGATCAAGCATATGCTGCCATTGACCTCTCAATCCTTGGCCTTCTTTTTGGAACTATGGTCGTGAGCGTCTATCTTGAACAAGCTGATATGTTCAAATACTTGGGTCTGAGCAGAATAATGTCCCTCCCCATCCCTTCTTACTGGCCTTGGCCTCGAACGCAAATATTGGATCTTCTGCAACTCCAATTGGTAATCCCCAAAACTTGGTCATTGCCATCCAGAGATGAAGAACATGCTTTGGATGAAGTGATTTCCGAGGAAGATGCGGCTTCCCACCGCTTCTCACCTGCAGCCATGTCACATCCCACAGCTTCAAATTCTCAAGAATTGAATCCTAGCAATTTGCAGGGGACTTTGAATGGTGGCCCTCTGGAAGAAAATGAAAGCTCGGCCAAGCCATGGAAAAGACTGCTTTGGAAGACATGTGTTTACCTTGTTACTATTGGCATGCTGATAGCATTGCTTGTTGGTCTAAACATGTCATGGACAGCCCTTACTGCAGCACTTGCTCTTGTGGTTCTCGACTTCAAGGATGCTCAGCCATGCCTACAAAAGGTTTCATATTCTATCTTAATCTTCTTTTGTGGCATGTTCATCACAGTGGATGGCTTTAACAGAACAGGGATACCTAGCACTCTCTGGAACCTAACCGAGCCTTATGCACGAATCAATCATGTTGGAGGGATCGTAGTTCTTACCCTAGTCATTCTTGTCCTCTCAAATGTTGCTTCAAATGTGCCTACTGTTCTTTTGCTTGGAGCAAGAGTGGCAGCATCAGCAACAATGACATCTCAGGGCCAAGAGAAAAGGGCATGGTTGATCTTAGCATGGGTGAGCACGGTTGCTGGAAACCTTTCGCTGTTGGGGTCAGCTGCAAACCTGATAGTGTGCGAGCAGGCTCGTCGTGCTCGGTTCTTTGGCTACACTCTCTCCTTCTGGAGCCACCTCAAGTTTGGTGTTCCTTCAACTCTCATAGTCACAGCCATTGGCTTACTCCTCATAAGGGGTTGA 2343 46.35 MKKKKKTEIQRPLLLTIESFDLLETLQYLPASAQIGFPFIDRDPDLFSILLSLLRTGNLPSKAKAVDLQDLFSEAKFYGIESLLVSSLSNPSQFDAFNLEKSLILPLNGRDSPSAISTTMFGSVHVAHGSKITSFDWSLQRKSTILTRFSAVDSLLALSPSVAAAGATDFSGLQILDLENGYVKETLNWENVTRSSSTVQAIGSSPKFLFTSFESGRRNSNSIVVFDIENLKPVSEIGTNEIYGADLDSGIPATKLSWISDYNLLMASGSHSGPSGVCGNIKLWDVRSGNLVWELKEKVDCFSDVTVSENLSAIFKVGVNSGEVFLMDLRNLGAMNTWVPTGETRRVVNGKKEGVGCKIGSHGNQVFCSKGGNLELWSEVFMGSTIKIAEMVLAPTEKVVLGSIAFAIFWVLAVFPAVPFLPIGRTAGSLLGAILMVIFRVITPDQAYAAIDLSILGLLFGTMVVSVYLEQADMFKYLGLSRIMSLPIPSYWPWPRTQILDLLQLQLVIPKTWSLPSRDEEHALDEVISEEDAASHRFSPAAMSHPTASNSQELNPSNLQGTLNGGPLEENESSAKPWKRLLWKTCVYLVTIGMLIALLVGLNMSWTALTAALALVVLDFKDAQPCLQKVSYSILIFFCGMFITVDGFNRTGIPSTLWNLTEPYARINHVGGIVVLTLVILVLSNVASNVPTVLLLGARVAASATMTSQGQEKRAWLILAWVSTVAGNLSLLGSAANLIVCEQARRARFFGYTLSFWSHLKFGVPSTLIVTAIGLLLIRG* 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2814261 2824023 + Vvi2g304 Vvi2g304 783003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g304 780 PANTHER BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER 21 387 IPR045068 -
Vvi2g304 780 MobiDBLite consensus disorder prediction 542 569 - -
Vvi2g304 780 SUPERFAMILY WD40 repeat-like 127 378 IPR036322 GO:0005515
Vvi2g304 780 Pfam BTB/POZ domain 39 86 IPR003131 GO:0051260
Vvi2g304 780 Gene3D - 115 391 IPR015943 GO:0005515
Vvi2g304 780 Pfam Citrate transporter 599 726 IPR004680 GO:0016021|GO:0055085
Vvi2g304 780 PANTHER PROTEIN BINDING PROTEIN 21 387 - -
Vvi2g304 780 SUPERFAMILY POZ domain 16 86 IPR011333 -
Vvi2g304 780 MobiDBLite consensus disorder prediction 541 572 - -
Vvi2g304 780 Gene3D Potassium Channel Kv1.1; Chain A 18 91 IPR011333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g304 - - - vvi:100854918 696.041
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g304 Vvi16g728 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g304 . . . . . . . Bma14g00702 . . Cma02g01442 . Car02g01209 . . . Cpe05g00345 . . . . . . . . . . . . . . Cone8ag0294 Cone12ag0300 . . . Csa05g00270 Chy09g01239 . Blo03g00341 . Bda07g00482 . . . . . . Cmo02g01478 . . . . . . . Bhi12g00278 . . Lac11g2076 Hepe06g1534 . Lcy12g1637 Cla01g00253 Cam01g0259 Cec01g0251 Cco01g0264 Clacu01g0257 Cmu01g0246 Cre09g2263 Lsi09g00244 . . Cme09g01773
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010340 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32