Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g309 ATGCCTTCATGGTGGGGGAAATCTTCATCCAAAGAAGTAAAGAAGAAGGAAAACCGGGAAAGTTTCATTGATTCAATACACCGGAAATTCAGGACTGTATCTGAAGAGAAGTGCAACAATAGATCAGGAGCTTCCCAAAGACACTGTGGTGACACTGTCTCAGAGAAGGAATCTCGATCCAGAGCACAATCAAGATCACCATCTCCCTCCACAAAAGTATCACGCTGTCAAAGTTTTGCAGAAAGGCCTCATGCCCAACCACTTCCACTCCCTGGACCGCACCTTACGAGTGTAGTGCGTACTGACTCTGGAATCAATGCATCAAAGAAACAAGGATTGGTTGAAGGCTCCAAGACACAGATGGTTTTGCCCCTGCCAAGACCTGGATATGTTGCAAACAGGCTAGATCCTACAGATGCTGAGGGGGATCTAGCCACTGCTTCTGTGTTTAGTTATAGTTCCATTGATAGTGAAGATCCATCTGAGTCACGCCTTCTCAGCCCCCAGGCATCTGATTATGAGAATGGAAACAGAACCACTATGAACAGCCCTTCCAGCGTAATGCACAAGGATCAGTCTCCTGTTCTCACCCCAAGGAAGCCAAGAGAAGCATTGAGGCCAGCTAATCTTTTGTTAAACAATCAGATTCACTCTACATCACCTAAATGGGTACCTTTAAGCACTCATGTGCCAAATTTTCCAGTTCCTCAGAATGGCGCTTTCTGTAGTGCTCCAGACAGCTCGATGTCAAGTCCTTCTAGAAGTCCAATGAGATTATTTAGCCCTGAGCAAGTCATGAATTCTAGTTTCTGGACGGGAAAGCCTTATGCTGATATAGCTTTGCTTGGATCTGGACACTGTTCTAGTCCAGGTTCAGGTCACAATTCTGGACATAATTCAATAGGAGGAGATATGTCAGGACAGCTGTTTTGGCCGCACAGCAGGTGTAGCCCTGAGTGTTCTCCAATACCAAGTCCCAGAATGACAAGCCCTGGTCCCAGCTCCAGAATACAGAGTGGTGCTGTCACCCCTCTGCATCCACGAGCTGGAGCAGCTGCTGCAGAGTCTCCTACCAACCGACCTGATGATGGAAAGCAACAAAGCCACCGATTGCCCCTTCCACCGATAACAATTTCTAATTCTTGTCCTTTTTCTCCTACATATTCTACATCAACAACTCCCTCAGTACCACGAAGTCCTGGTAGGGCGGAAAACCCAATCAGCCCTGGATCACGCTGGAAGAAGGGTCGGCTCTTAGGGAGAGGCACATTTGGGCATGTATATCTTGGGTTTAATAGTGAAAGTGGGGAGATGTGTGCAATGAAGGAGGTTACATTATTTTCAGATGATGCGAAGTCAAAGGAAAGTGCACAGCAGCTGGGCCAAGAAATTTCGCTCCTCAGTCGCTTACGTCATCCAAATATAGTGCAATACTATGGATCTGAGACAGTGGATGACAAACTCTACATATATTTGGAATATGTATCTGGTGGTTCCATATATAAACTTCTTCAAGAGTATGGCCAGCTTGGTGAAATAGCTATTCGTAGCTATACTCAACAAATTCTGTCAGGGCTTGCATATTTGCATGCTAAAAACACTGTCCATAGGGACATCAAAGGAGCAAATATACTGGTGGATCCCAATGGCCGTGTGAAATTGGCAGATTTTGGAATGGCAAAGCATATTACTGGACAATCTTGTCCGTTATCCTTAAAGGGGAGCCCTTACTGGATGGCACCTGAGGTCATAAAGAACTCAAATGGCTGTAATCTTGCAGTCGATTTATGGAGTCTTGGGTGCACAGTTTTGGAGATGGCTACAACAAAACCACCTTGGAGCCAGTATGAAGGGGTTGCTGCTATGTTTAAGATTGGTAACAGTAAAGAACTTCCCACAATACCTGATCATCTCTCAGAGGAGGGCAAGGACTTTGTAAGGCAGTGCTTGCAACGCAACCCATTGCATCGTCCCACAGCTGCTTGGCTATTGGAGCACCCTTTTGTTAGAAATGCTGCGCCTCTGGAAAGACCTAGTCTTAGTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATGGCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCATCAGTCTAGATGTTCAAAAACTGGTTCAGGATCCAGTGATACCCATACCCCAAGGAACTTATCAAGCCCTGTTTCTCCTATTGGGAGCCCTCTTCTGCATTCAAGATCACCACAACATATGAGTGGGAGGATGTCTCCCTCTCCCATATCCAGTCCTCGCACCACATCTGGTTCATCCACGCCTCTCAGTGGGGGTAGTGGTGCCATACCTTTTCATCATCCAAAGCCAATAAACTACATGCATGAAGGCATCGGAATCATCCCAAGATCCCAGAGCAGTCTCTATGCTAATGGCAGCAGCTCCTACCAAGATCCCCAGCCTGATCTTTTTCGAGGGATGCCACAAGTATCTCATGTTTTCCGGGAGATGATTTCATCTGAAAGTGGCAGTTTTGGAAATCAGTTTGGACGACCTGTCCATGGAGACCCCAGGGACCTGTGTGATGCACAATCAGTCTTGTCTGATCGCGTAGCTCAGCAGCTTTTGAGGGACCATACAAACTTGCACCTTTCTCTGGACCTAAATCCTGGTTCTCCTATGCTCACGCGCACTAATGGAATTTAA 2706 46.42 MPSWWGKSSSKEVKKKENRESFIDSIHRKFRTVSEEKCNNRSGASQRHCGDTVSEKESRSRAQSRSPSPSTKVSRCQSFAERPHAQPLPLPGPHLTSVVRTDSGINASKKQGLVEGSKTQMVLPLPRPGYVANRLDPTDAEGDLATASVFSYSSIDSEDPSESRLLSPQASDYENGNRTTMNSPSSVMHKDQSPVLTPRKPREALRPANLLLNNQIHSTSPKWVPLSTHVPNFPVPQNGAFCSAPDSSMSSPSRSPMRLFSPEQVMNSSFWTGKPYADIALLGSGHCSSPGSGHNSGHNSIGGDMSGQLFWPHSRCSPECSPIPSPRMTSPGPSSRIQSGAVTPLHPRAGAAAAESPTNRPDDGKQQSHRLPLPPITISNSCPFSPTYSTSTTPSVPRSPGRAENPISPGSRWKKGRLLGRGTFGHVYLGFNSESGEMCAMKEVTLFSDDAKSKESAQQLGQEISLLSRLRHPNIVQYYGSETVDDKLYIYLEYVSGGSIYKLLQEYGQLGEIAIRSYTQQILSGLAYLHAKNTVHRDIKGANILVDPNGRVKLADFGMAKHITGQSCPLSLKGSPYWMAPEVIKNSNGCNLAVDLWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTIPDHLSEEGKDFVRQCLQRNPLHRPTAAWLLEHPFVRNAAPLERPSLSSELEPPPAVTNAVRSMAIGHTRNVLESEGVAIHQSRCSKTGSGSSDTHTPRNLSSPVSPIGSPLLHSRSPQHMSGRMSPSPISSPRTTSGSSTPLSGGSGAIPFHHPKPINYMHEGIGIIPRSQSSLYANGSSSYQDPQPDLFRGMPQVSHVFREMISSESGSFGNQFGRPVHGDPRDLCDAQSVLSDRVAQQLLRDHTNLHLSLDLNPGSPMLTRTNGI* 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2874832 2882840 + Vvi2g309 Vvi2g309 783008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g309 901 MobiDBLite consensus disorder prediction 33 119 - -
Vvi2g309 901 CDD STKc_MEKK1_plant 412 669 - -
Vvi2g309 901 MobiDBLite consensus disorder prediction 714 779 - -
Vvi2g309 901 Gene3D Transferase(Phosphotransferase) domain 1 411 689 - -
Vvi2g309 901 MobiDBLite consensus disorder prediction 372 399 - -
Vvi2g309 901 MobiDBLite consensus disorder prediction 1 20 - -
Vvi2g309 901 MobiDBLite consensus disorder prediction 706 789 - -
Vvi2g309 901 MobiDBLite consensus disorder prediction 316 414 - -
Vvi2g309 901 MobiDBLite consensus disorder prediction 153 201 - -
Vvi2g309 901 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 814 - -
Vvi2g309 901 Pfam Protein kinase domain 414 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g309 901 ProSiteProfiles Protein kinase domain profile. 413 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g309 901 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 814 - -
Vvi2g309 901 MobiDBLite consensus disorder prediction 63 77 - -
Vvi2g309 901 ProSitePatterns Protein kinases ATP-binding region signature. 419 442 IPR017441 GO:0005524
Vvi2g309 901 MobiDBLite consensus disorder prediction 153 192 - -
Vvi2g309 901 SMART serkin_6 413 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g309 901 SUPERFAMILY Protein kinase-like (PK-like) 411 760 IPR011009 -
Vvi2g309 901 MobiDBLite consensus disorder prediction 99 115 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g309 Vvi16g727 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76536 PF00069 Pkinase 1.40E-70 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g309 K20717 - vvi:100263296 1689.09