Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g311 ATGGGTGTGAAAAAGTCACCCACCATGTGTGCCAGTGTTGGTATTCAGGGGATTGCTTGGGCTTTTGGTGGTATGATCTTTGCCCTTGTCTACTGCACTGCTGGTATCTCAGGAGGACACATCAACCCAGCTGTGACCTTTGGTCTGCTACTGGCGAGGAAGCTGTCTCTTACCAGGGCAATTTTCTACATCATAATGCAGTGCCTTGGTGCCATCTGTGGGGCTGGTGTTGTTAAGGGTTTTGAGGGTTCCCAATCCTATGAGGTGTTGGGTGGTGGAGCTAACGTTGTGAATTCTGGCTACACCAAGGGTGATGGCCTTGGTGCTGAGATTGTTGGCACCTTCGTTCTTGTTTACACTGTCTTCTCTGCTACTGATGCCAAGAGAAACGCCAGAGACTCTCACGTCCCTATTTTGGCCCCCCTCCCCATTGGGTTTGCAGTGTTCTTGGTTCACTTGGCCACCATCCCCATCACAGGAACTGGCATTAACCCAGCCAGGAGTCTTGGAGCTGCTATCATCTTCAACAGAGAGCATGCATGGGATGACATGTGGATCTTCTGGGTGGGACCGTTCATTGGAGCTGCTCTTGCTGCCATGTACCAGCAGATAGTCATCAGAGCCATTCCATTCAAGAGCAGGGCTTGA 648 51.08 MGVKKSPTMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAIFYIIMQCLGAICGAGVVKGFEGSQSYEVLGGGANVVNSGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNREHAWDDMWIFWVGPFIGAALAAMYQQIVIRAIPFKSRA* 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2890637 2893841 - Vvi2g311 Vvi2g311 783010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g311 215 Pfam Major intrinsic protein 8 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi2g311 215 Gene3D Glycerol uptake facilitator protein. 1 213 IPR023271 -
Vvi2g311 215 TIGRFAM MIP: MIP family channel proteins 10 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi2g311 215 CDD MIP 1 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi2g311 215 ProSitePatterns MIP family signature. 40 48 IPR022357 -
Vvi2g311 215 PANTHER AQUAPORIN PIP1-2-RELATED 1 214 - -
Vvi2g311 215 PRINTS Major intrinsic protein family signature 22 46 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi2g311 215 PRINTS Major intrinsic protein family signature 59 78 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi2g311 215 PRINTS Major intrinsic protein family signature 109 127 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi2g311 215 PRINTS Major intrinsic protein family signature 145 167 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi2g311 215 PRINTS Major intrinsic protein family signature 185 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi2g311 215 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 214 IPR034294 -
Vvi2g311 215 SUPERFAMILY Aquaporin-like 12 206 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g311 Vvi15g852 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g311 K09872 - vvi:100233001 432.18