Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g313 ATGGGATTGAGAACCGGGATGTTGAGCACTGTAGCATATTATGTGCATGGAAAAAATAAGTTGGAAGCGCCATACACCACCCCGGATGCTGTTTTGATTCAGAAGAATGCCAAGGCCAAACTATTTTCCAGAATGGTGGACCCTGATCGGCACAGGAAAATTGTTAACATCGATGACCCAAACGCACCTTTCTTTATAGCACAAGGGAACCCAGATGTACCCGTTGTGACCTTTGCAATGGAGAATAAGGATGCAGATGTTCATCCATTGAAGTTTGAACTCTCCCTGTTTGAGACCCAGGTCTTGGTCCAGACACCCAAGGGAATATTGGAGATTTCATCAGGATTGCTGGGGAGGCATAATATTTACAACATTCTGGCAGCGGTTGCAGTTGGGATTGCTGTTGGGGCGCCTTTGGAGGACATTGTTAGAGGTATTGAAGAGATTGATGCAGTTCCTGGTAGATGTGAGTTAATAGATGAGGAACAGGCATTTGGGGTGATTGTGGATTATGCGCATACTCCTGATGCCCTATCTAGATTACTGGACTCCGTTAGGGAGCTTGGAGCAAGGCGGATTATTACAGTTTTTGGTTGTGCTGGTGAGAGTGATAGAGGGAAGCGGCCCATAATGACGAAGATTGCAACAGATAAAAGTGATGTGGTTATTCTGACCTCCGACAATCCAAAGAATGAAGATCCATTGGACATCTTGGATGATATGTTGGCTGGCGTGGGATGGACAATGCACGATTACTTGAAATATGGGGCAAATGATTACTACCCGCCTCTTCCAAACGGTCATAGGCTTTTCTTGCATGATATTAGACGGGTAGCTGTTCGTGCAGCTGTTGCCATGGGCGAGGAAGGTGATATTGTTGTGGTTGCTGGAAAAGGTCATGAGACATATCAGATAGAAGGTGACAAAAAGGAGTTCTTTGATGATCGGGAGGAATGCCGTGAAGCATTGCAGTATGTTGATGAGCTTCATCAAGCTGGAATAGACACGAGTGAATTTCCATGGCGGTTACCTGAGAGTCACTAA 1044 45.5 MGLRTGMLSTVAYYVHGKNKLEAPYTTPDAVLIQKNAKAKLFSRMVDPDRHRKIVNIDDPNAPFFIAQGNPDVPVVTFAMENKDADVHPLKFELSLFETQVLVQTPKGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELGARRIITVFGCAGESDRGKRPIMTKIATDKSDVVILTSDNPKNEDPLDILDDMLAGVGWTMHDYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEGDIVVVAGKGHETYQIEGDKKEFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH* 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2915651 2921109 - Vvi2g313 Vvi2g313 783012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g313 347 Pfam Mur ligase family, glutamate ligase domain 152 235 IPR004101 GO:0009058|GO:0016881
Vvi2g313 347 Gene3D - 34 155 IPR036565 GO:0005524|GO:0009058
Vvi2g313 347 PANTHER UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2, 6-DIAMINOPIMELATE LIGASE MURE HOMOLOG, CHLOROPLASTIC-LIKE 1 35 - -
Vvi2g313 347 PANTHER UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2, 6-DIAMINOPIMELATE LIGASE MURE HOMOLOG, CHLOROPLASTIC-LIKE 35 331 - -
Vvi2g313 347 PANTHER MUR LIGASE FAMILY MEMBER 35 331 - -
Vvi2g313 347 PANTHER MUR LIGASE FAMILY MEMBER 1 35 - -
Vvi2g313 347 Gene3D - 157 335 IPR036615 GO:0009058|GO:0016881
Vvi2g313 347 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 152 324 IPR036615 GO:0009058|GO:0016881
Vvi2g313 347 Pfam Mur ligase middle domain 36 131 IPR013221 GO:0005524|GO:0009058|GO:0016881
Vvi2g313 347 SUPERFAMILY MurD-like peptide ligases, catalytic domain 36 148 IPR036565 GO:0005524|GO:0009058
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g313 - - - vvi:100242838 657.907
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g313 . . . . . . . Bma14g00701 . . Cma02g01444 . Car02g01212 . . . Cpe05g00342 . . . . . . . . . . . . . . Cone8ag0299 Cone12ag0305 . . . Csa05g00273 Chy09g01235 . Blo03g00340 . Bda07g00481 . . . . . . Cmo02g01481 . . . . . . . Bhi12g00272 . . . Hepe06g1538 . Lcy12g1641 Cla01g00256 Cam01g0262 Cec01g0254 Cco01g0267 Clacu01g0260 Cmu01g0249 Cre09g2260 Lsi09g00249 . . Cme09g01769
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006982 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37