Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g315 ATGGACCCCGAGAACGTGAAGTCAAACCTAGTTTTGATTCTCGATTACGGCTCGCAATACACACATCTCATCACTCGCCGAATCCGAAGCCTATCGGTCTTCTCTCTGTGCATCTCCGGCACATCGTCGCTGAAATCCATTGTCGACCTCAAGCCGCGTGTCATCATCCTGTCTGGCGGCCCCCACTCCGTTCACTCGCCGAACTCGCCGAGCTTCCCTGACGGCTTCATTGAGGTCGTGAGGGCTTGTGGGTTGTTCGGGTCCAAGGAAGTCGGCCATAAGCAGACTGTATGGATGAGTCATGGCGACGAGGCCGCAGAATTGCCAGAGGGGTTTGAGGTGGTGGCGCGCAGCCAGCAGGGGGCAGTGGCTGCGGTTGAGAATAGGGAGCGGAGGTTTTACGGCCTTCAGTATCATCCGGAGGTGACACATTCCCCAGAAGGTATGGAAACACTGCGGTATTTCCTCTTTGATGTATGTAGAGTTGATGCAGGATGGAATATGGAAGATGTCCTTAATGAGGAAATTAAATTGATCAAAGGCATGGTTGCGCCTGATGATCATGTCATCTGCGCGTTATCTGGGGGTGTGGATTCCACAGTTGCAGCTACTCTTGTTCACAAGGCAATCGGAGATAGACTTCACTGTGTATTTGTTGACAATGGTTTATTGAGGTATAAGGAGAGAGAGCGTGTGATGGAAACCTTTGAAAGGGATCTTCATTTGCCTGTTACTTGTGTTGATGCCACAAATCAATTCCTTAGTAAGCTGAAAGGTGTGGTAGATCCTGAGATGAAAAGGAAAATTATCGGAAAGGAGTTCATCTCCAGCTTTGATGCATTTGGCCAAGATTTGGAACATAAATTTGGAAAGAAACCTGTTTACTTGGTCCAAGGAACATTGTACCCTGATGTGATTGAATCTTGCCCACCACCTGGAAGTGGAAGAACGCACTCCCACACAATCAAGAGCCATCATAATGTTGGAGGGCTTCCTAAGGATATGAAATTGAAGCTTATTGAACCACTTAAACTTCTGTTTAAAGATGAGGTTCGTGAACTTGGGAGGATCTTGAATGTTCCTCGGGCATTTCTACAGCGCCATCCGTTCCCTGGGCCTGGTCTTGCAGTGCGAGTTTTGGGGGATGTTACAGAAGGAAATGCCTTGGATATTCTACGCCAGGTTGACGAGATTTTTATTCAGTCAATCAAGGATGCTGGGATTTATGATTCTATTTGGCAAGCTTTTGCAGTGTTTTTGCCAATAAGGTCGGTTGGGGTTCAAGGTGATCAAAGAACACATTCTCATGTTGTTGCTCTCAGAGCTGTTACTAGTCAAGATGGAATGACAGCAGACTGGTACAATTTTGAGCACAAGTTCCTTGATGATGTGGCAAGAAAAATTTGCAATAGTGTTCGAGGTGTAAACCGAGTCGTTCAAGACATTACATCAAAGCCTCCATCAACAATTGAGTGGGAATGA 1482 46.76 MDPENVKSNLVLILDYGSQYTHLITRRIRSLSVFSLCISGTSSLKSIVDLKPRVIILSGGPHSVHSPNSPSFPDGFIEVVRACGLFGSKEVGHKQTVWMSHGDEAAELPEGFEVVARSQQGAVAAVENRERRFYGLQYHPEVTHSPEGMETLRYFLFDVCRVDAGWNMEDVLNEEIKLIKGMVAPDDHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKERERVMETFERDLHLPVTCVDATNQFLSKLKGVVDPEMKRKIIGKEFISSFDAFGQDLEHKFGKKPVYLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRELGRILNVPRAFLQRHPFPGPGLAVRVLGDVTEGNALDILRQVDEIFIQSIKDAGIYDSIWQAFAVFLPIRSVGVQGDQRTHSHVVALRAVTSQDGMTADWYNFEHKFLDDVARKICNSVRGVNRVVQDITSKPPSTIEWE* 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2935650 2939145 + Vvi2g315 Vvi2g315 783014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g315 493 TIGRFAM guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 171 493 IPR001674 GO:0003922|GO:0005524|GO:0006164|GO:0006177
Vvi2g315 493 Pfam GMP synthase C terminal domain 402 492 IPR001674 GO:0003922|GO:0005524|GO:0006164|GO:0006177
Vvi2g315 493 Pfam tRNA methyl transferase HUP domain 188 225 - -
Vvi2g315 493 PANTHER GMP SYNTHASE (GLUTAMINE-HYDROLYZING), PUTATIVE / GLUTAMINE AMIDOTRANSFERASE, PUTATIVE-RELATED 3 86 - -
Vvi2g315 493 PANTHER GMP SYNTHASE (GLUTAMINE-HYDROLYZING), PUTATIVE / GLUTAMINE AMIDOTRANSFERASE, PUTATIVE-RELATED 77 493 - -
Vvi2g315 493 Gene3D - 4 82 IPR029062 -
Vvi2g315 493 Gene3D - 83 163 IPR029062 -
Vvi2g315 493 Pfam Glutamine amidotransferase class-I 91 158 IPR017926 -
Vvi2g315 493 Gene3D HUPs 167 377 IPR014729 -
Vvi2g315 493 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 10 165 - -
Vvi2g315 493 PANTHER GMP SYNTHASE-RELATED 3 86 - -
Vvi2g315 493 PANTHER GMP SYNTHASE-RELATED 77 493 - -
Vvi2g315 493 CDD GMP_synthase_C 188 492 IPR001674 GO:0003922|GO:0005524|GO:0006164|GO:0006177
Vvi2g315 493 SUPERFAMILY GMP synthetase C-terminal dimerisation domain 372 493 - -
Vvi2g315 493 ProSiteProfiles GMP synthetase ATP pyrophosphatase (GMPS ATP-PPase) domain profile. 166 367 IPR025777 GO:0003921|GO:0005524
Vvi2g315 493 Gene3D - 378 493 - -
Vvi2g315 493 SUPERFAMILY Class I glutamine amidotransferase-like 9 196 IPR029062 -
Vvi2g315 493 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 155 387 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g315 K01951 guaA, GMPS; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] - vvi:100246139 979.163
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g315 . . . . . . . . . . Cma02g01447 . Car02g01215 . . . Cpe05g00340 . . . . . . . . . . . . . . Cone8ag0300 . . . . Csa05g00277 Chy09g01232 . . . . . . . . . . Cmo02g01484 . . . . . . . Bhi12g00269 . . Lac11g2086 Hepe06g1540 . Lcy12g1646 Cla01g00258 Cam01g0265 Cec01g0256 Cco01g0271 Clacu01g0264 Cmu01g0253 Cre09g2256 Lsi09g00253 . . Cme09g01767
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009759 2 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33