Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g317 ATGGATACTGAACCCCAAAATCAAGGAGTGCCAGAGAACCTAAGGAACCAGCTTGCCCTTGCTGTTAGAAACATTCAATGGAGCTATGCAATCTTCTGGTCAATTTCAACTAGACAACCAGGGGTACTGGAGTGGGGAGATGGGTACTACAATGGAGACATCAAAACAAGAAAAACCGTTCAGGCTGTGGAGTTCAATGCTGACCAAATGGGGTTGCAGAGAAGTGAGCAATTGAGAGAACTTTACGAGTCCCTTTCAATAGGTGAATCCAACCCACAACCCAGAAGGCATTCTGCAGCATTATCACCTGAAGACCTCACAGATGCAGAGTGGTATTACTTGGTTTGCATGTCCTTCGTGTTCGATATAGGCCAAGGATTGCCCGGAAGAACATTGGCTAGTGGCCAGCCTATCTGGCTATGCAATGCTCCTTATGCAGAGAGCAAAGTGTTCAGCCGCTCTCTGCTAGCAAAGAGTGCATCTATCCAGACTGTGGTATGCTTTCCATATTTAGGAGGTGTGATAGAGCTGGGTGCGACTGAAATGGTTTTGGAGGACCCGAGTCTCATCCAACACATCAAAACTTCTTTTCTGGAGATTCCATACCCCATGCTGTCCAGGATATCTAATTCCAGAAAGATAAGAGAAGACAAAGACCCTGCTTCTGCAGAGCTTGATCATAATTTTCTCGACACCAACCTTAATCCAGCAGTTTTAGAAGATGAATTCAGTAACTGTGTCCATAACTCAATGAACTCTAGTGACTGCATATCTCAGACCATCATGAATCCTGAAAAGTTGATTTTGGGACCATGCTTTCGAAATTCCAATAAGGAGTCAAGCTTCGTTAGTTGGAAGAAAAGAGGATTGATGGGTACTCAGAAGCTGAACACTGGAACCCAACAAAAATTATTGAAGAAGGTGCTGTTTGAAGTTGCTCAAATGCATGGTGGTTGCTTAATGAGCTCCCGGGATAATAATGGAGATAACGATGAAATTTGGAGACCAGAGGCTGACGAAATCACTCTGAACCATGTGTTGTCCGAGAGGAAACGGAGGGAAAAAATAAATGAAAGGTTCTCGGTTCTCAGATCACTTGTTCCTTCTATTAACCAGGTCAACAAAGTGTCTGTACTTGATGACACCATAGAATACCTGAAAGAGCTCAAAAGAAGAGTTGAAGAGTTGGAATCTAGCAAGGAGTCAACAGAAATAGAGGCAAGAACAAGCAGGAGAACCCCAGATACTGCAGAGAGGACATCTGATAACTATGGCAACGACAGAGTTGGAAATGGCAAGAAACCTTTGTTGAACAAGAGGAAGGCTTGTGACATTGATGAAATGGAGCCTGATTCCAACCGGGTTTTACTGAAAGATGATTCAGCTGAAAATATAACAGTCAATATGAACGAGAAGGATATTCTAATCGAACTGAGGTGTCCATGGAGAGAGTGCTTGTTGCTTGAGATCATGGATGCTGTAAGCAATCTCCATTTAGATTCTCAGTCAGTTCAGTCAGCCAGCGTTGATGGAATTCTTTCTCTGACCATTAAATCAAAGTTTAAGGGATCATCATTTGCATCAGCAGAAACAATCAGACAAGCACTTCAGAGAGTTGTCCCAAAGTGTTGA 1632 43.14 MDTEPQNQGVPENLRNQLALAVRNIQWSYAIFWSISTRQPGVLEWGDGYYNGDIKTRKTVQAVEFNADQMGLQRSEQLRELYESLSIGESNPQPRRHSAALSPEDLTDAEWYYLVCMSFVFDIGQGLPGRTLASGQPIWLCNAPYAESKVFSRSLLAKSASIQTVVCFPYLGGVIELGATEMVLEDPSLIQHIKTSFLEIPYPMLSRISNSRKIREDKDPASAELDHNFLDTNLNPAVLEDEFSNCVHNSMNSSDCISQTIMNPEKLILGPCFRNSNKESSFVSWKKRGLMGTQKLNTGTQQKLLKKVLFEVAQMHGGCLMSSRDNNGDNDEIWRPEADEITLNHVLSERKRREKINERFSVLRSLVPSINQVNKVSVLDDTIEYLKELKRRVEELESSKESTEIEARTSRRTPDTAERTSDNYGNDRVGNGKKPLLNKRKACDIDEMEPDSNRVLLKDDSAENITVNMNEKDILIELRCPWRECLLLEIMDAVSNLHLDSQSVQSASVDGILSLTIKSKFKGSSFASAETIRQALQRVVPKC* 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2943364 2948362 - Vvi2g317 Vvi2g317 783016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g317 543 PANTHER TRANSCRIPTION FACTOR EGL1 272 539 - -
Vvi2g317 543 PANTHER TRANSCRIPTION FACTOR EGL1 6 269 - -
Vvi2g317 543 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 408 IPR036638 GO:0046983
Vvi2g317 543 Pfam Helix-loop-helix DNA-binding domain 344 389 IPR011598 GO:0046983
Vvi2g317 543 SMART finulus 346 395 IPR011598 GO:0046983
Vvi2g317 543 PANTHER TRANSCRIPTION FACTOR TT8 6 269 - -
Vvi2g317 543 PANTHER TRANSCRIPTION FACTOR TT8 272 539 - -
Vvi2g317 543 Coils Coil 379 413 - -
Vvi2g317 543 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 14 197 IPR025610 -
Vvi2g317 543 MobiDBLite consensus disorder prediction 397 422 - -
Vvi2g317 543 MobiDBLite consensus disorder prediction 397 435 - -
Vvi2g317 543 Gene3D - 335 405 IPR036638 GO:0046983
Vvi2g317 543 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 340 389 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g317 - - - vvi:100258234 1007.67
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g317 Vvi15g865 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g317 Blo02g01111 Blo03g00217 Bda06g00113 Bda08g00368 Bpe05g00647 Bpe07g00106 . . Cmo06g01033 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0782 Cone9ag0786 . . . Cme06g02703 . . Bda07g00480 . . . . Bma12g00073 . . . Cma06g01013 . Car06g00850 . Cpe08g00597 . . . . . . . . . . . . . . . . Csa03g00375 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003574 4 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 1 3 2 2 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14580 PF14215 bHLH-MYC_N 1.40E-54 CL0161 Vvi TF