Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g32 ATGTCCATGGATGCGAGCTCTGGTTCTGGGGATGGTGGCAACATCAAAGGAGTGCCCACACATGGTGGCCGCTACGTACGCTACAATGTGTACGGAAACTTTTTCGAGGTCTCTGCAAAGTATGTTCCTCCGATTCGTCCGGTTGGTAGAGGTGCATATGGCATTGTCTGTGCTGCAGTAAATTCAGAAACACATGAGGAGGTTGCCATTAAGAAGATTGGTAATGCATTTGACAACAGAATAGATGCCAAAAGGACCTTAAGAGAAATTAAGCTCCTTCGTCACATGGATCATGAAAATGTTATTGCCATCAAGGACATTATACGACCACCAAAGAAGGAAACTTTCAATGATGTCTACATTGTTTATGAATTGATGGACACTGATCTTCATCAGATCATTTGTTCTAACCAATCCCTCACCGATGATCATTGTCAGTACTTTCTGTATCAGCTGTTGCGAGGATTAAAATATGTACACTCTGCAAATGTCTTGCACCGTGATCTAAAGCCCAGCAATTTGCTTCTGAATGCAAATTGCGATCTTAAGATTGGAGACTTTGGACTGGCAAGGACGACATCTGAAACGGATTTCATGACTGAGTATGTGGTCACTCGTTGGTATCGGGCACCAGAGTTGCTCCTTAATTGTTCAGAATATACTGCTGCGATTGATATATGGTCTGTTGGTTGCATACTAGGTGAAATCATGACCAGAGAACCATTATTCCCTGGCAAAGATTATGTTCATCAGCTGAGGCTTATCACAGAGCTTCTCGGTTCACCTGATGATGCAAGTCTTGGCTTTCTCCGAAGTAATAATGCCCGACGATATGTTAGGCAGCTTCCACAATATCCAAAGCAACAAATCTCTGCTAGATTCCCCAATATGTCACCTAGTGCTGTTGACTTGCTAGAGAAAATGCTTGTCTTTGATCCCACCAAGCGTATAACAGTCGACGAGGCACTATGTCACCCATATTTGTCATCTCTACATGATATCAATGATGAGCCTGTTTGTCCCAGTCCTTTTAGTTTTGATTTCGAGCAATCATCAATCACTGAAGAGAACATCAAGGAGCTCATCTGGAGGGAATCAGTGAAGTTTAATCCTGACCCAACTCACTAG 1128 42.91 MSMDASSGSGDGGNIKGVPTHGGRYVRYNVYGNFFEVSAKYVPPIRPVGRGAYGIVCAAVNSETHEEVAIKKIGNAFDNRIDAKRTLREIKLLRHMDHENVIAIKDIIRPPKKETFNDVYIVYELMDTDLHQIICSNQSLTDDHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIMTREPLFPGKDYVHQLRLITELLGSPDDASLGFLRSNNARRYVRQLPQYPKQQISARFPNMSPSAVDLLEKMLVFDPTKRITVDEALCHPYLSSLHDINDEPVCPSPFSFDFEQSSITEENIKELIWRESVKFNPDPTH* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 380309 386888 - Vvi2g32 Vvi2g32 782731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g32 375 SUPERFAMILY Protein kinase-like (PK-like) 45 336 IPR011009 -
Vvi2g32 375 Gene3D Transferase(Phosphotransferase) domain 1 126 355 - -
Vvi2g32 375 Pfam Protein kinase domain 46 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g32 375 ProSitePatterns MAP kinase signature. 77 180 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vvi2g32 375 ProSiteProfiles Protein kinase domain profile. 42 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g32 375 ProSitePatterns Protein kinases ATP-binding region signature. 48 72 IPR017441 GO:0005524
Vvi2g32 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Vvi2g32 375 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED 18 374 - -
Vvi2g32 375 Gene3D Phosphorylase Kinase; domain 1 25 365 - -
Vvi2g32 375 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 18 374 - -
Vvi2g32 375 CDD STKc_TEY_MAPK 35 371 - -
Vvi2g32 375 SMART serkin_6 42 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76537 PF00069 Pkinase 3.70E-71 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g32 K20600 K04464 vvi:100260441 764.992