Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g320 ATGAATCCCCTGTCAGAATTACATATAAGTGAAAATGGAAGTTTTAAAAACTCAAATGAAGGTTACAACCCAGAAGTTGCTGAACAAATGGAAAGTTTTGATGGAACGATAGAGGGTAACCTGAGCCAGAGAACACAATTAGTGGAGTGGCTAAATGGTATACTTCCTTATTTAAGTTTGCCATTGGAGGCTTCAGAGGAGGACCTAAGAGCATGTTTAATTGATGGCACTGTTCTATGTGGCATTTTGAACAGGCTGAGTCCTGGTTCCATTGAAATGGGAGGCATCTCCGAGTCATATTTGGAGAATCTCAAAAGGTTTTTGGCAGCTATGGAAGAGATGGGACTACCAAGATTTGAACTATCTGACCTAGAACAGGGATCAATGGATGCAGTTCTCCAGTGTCTTCAGACACTTAGAGCACATTTTAATTTTAATATTGGGGGAGAGAACATTCGGAATTATTCAAGAAAGAAATGGAATTTGTGCGAGGTAGAATGTTTGGAGGGATTTGATCGTTCTCAAGGAGATGCATCTTCCCATGGAGAACACTCTGATGAATTTGTAGAAGAGAGGAGGAATTCACTGGACTCTAAATTTCAACATGTTTTGCGTCGTTCTGTTTTCTCAGAGCCATTGGCTGCATCAATACATCATGTTGGACATAGGTTCCAGGAGGGGTTCCAATTGAAGCAAGGGGGTTATGCTGATTTTCCTGCTGCTAAAATTTCTGAATTAGTGGAACAAAAAAGTCTAGAAAACACCCCAACTCATCTGCTTTTCAGCATTCTGATCAATATTCTGGATGGAAGCATTGAAAGAAAGAATGGGGATGTACCTCATCGAGTTGCATTTCTGTTGAGGAAAATTATCCAAGAGATAGAGCAGCGAATTTCTACTCAAGCAGAAAACTTAAAAAATCAAAACAATCTTTATAAGGCTCGTGAAGAGAAGTATCAATCAAGAATAAGAGTACTTGAAACCCTTGCAACTGGGACCACTGAAGAAAATAGGGTTGTTATGCACCAGCTGCAGCAAATAAAGATTGAAAATACCAAAATAGAAGAGAGGAAAAAACTTGAAGAGCAGGATGTGGATAGATTAATGAAGGAGAAGGATCGTAGTGATAATGAGATTTTGGCACTTAAAGAGGAACTTGAAATGGCCAGAAAGACACATGAGAAACATTGCTTGCAATTGGAAACACAAGCTAAGGAAACCAAAGTCGAATTGGAGAAAAAATTAAAGGAGCTTGAGAATCTTCTAACAGATTCAAAGAAGAAGGTGAAAGAACTGGAGGCATTTTCTGAATCCAAATCTCGAAGATGGAAAAGGAAAGAACTCAGATACCAGAATTTTGTAGATTCTCAATTTGGAGCTTTGCAGGAATTGAGGGTGGCTTCTGACTCCATAAAGCGAGAAGTTTTGAAGACACACAGGACTTACTCTGAGGAATTTAATTACTTAGGAATGAAGCTTAAGGGTCTAACTGAGGCTGCTGAAAACTACCATATGGTTCTGGAAGAAAATCGGAGACTGTATAATGAGGTTCAAGATTTGAAAGGAAATATTAGGGTGTATTGTCGGATAAGGCCATTCCTTCCAGGGCAAAGTGAAAAGTATACAACCATAGAATATATTGGTGAGAATGGGGAATTGGTCATTGTAAATCCTGCAAAACAAGGAAAAGATAGCCGTAGGCTGTTCAAGTTCAATAAGGTGTTTAGTCCAGCAGCCACTCAAGAGGAGGTATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTATACTATGACTGGGCCTGATGTATCTTCCAAAGTGGACTGGGGGGTTAACTATCGAGCTTTGAACGATCTTTTCCATATCTCTCAGAGCAGAAAAAGTTCCATCATGTATGAAGTCGGTGTCCAAATGGTTGAGATATATAATGAACAAGTGCGAGATTTGCTCTCGAGTGATGGTTCTCAGAAAAGATATCCTTTCCTTCAATTCAATACTTCTGTCCCTGATGCAAGCATGCACCCTGTTAAATCAACCGCAGACGTACTGGAATTAATGAATATTGGATTAATGAATAGGGCTGTAGGAGCCACTGCGCTAAATGAGAGAAGTAGCCGATCTCACAGCATTCTCACTGTTCATGTTCGCGGCTTGGACTTGGAGACTGATGCTGTTTTGCGTGGAAGTTTACATTTGGTAGACCTTGCAGGCAGTGAAAGAGTACTTCGCTCTGAAGCAACTGGGGACAGGCTTAGGGAAGCACAGCACATAAACAAATCACTATCAGCTCTTGGAGATGTAATATTTGCTTTAGCACAAAAGAGTCCTCATGTGCCATACAGAAATAGCAAACTAACTCAAGTCCTTCAAAGCTCTTTGGGAGGTCAAGCGAAGACCCTTATGTTTGTACAGCTTAATCCTGATGTGGATTCCTACTCCGAAACTATAAGTACCTTGAAGTTTGCCGAGAGAGTCTCTGGTGTTGAGTTAGGTGCTGCAAGGAGCAACAAAGAGGGAAGGGATGTTAGAGAACTTATGGAGCAGGTGGCATTCCTCAGGGACTCAAATGCTAAAAAGGATCTGGAGATTGAACAGTTGCAGCAGGTTAATGTCAACTCCACTAGTGGAAAACGTGGTATGAACTCACTAAGGTATGGGTCTTCTTCTCCAAGAAGACATTCCATTGGGGCTTCTCGTCAAAGTCACAGGCTGCCACAAGGCAAAGGCTCAGGTCTTGTTCAAAAAGCGGCTTCTGATCTGGACAATTGCTCAGAGTACAGTGACAAGCATTCTGAAGCAGGCCAGAATTTTACTGAAGACATTGAGCTATTAGGATTTGGGGATGCAGATTCTGAGGAGAGATTAAGTGATATATCTGATGGGGGCCTGTCAATGGGAACAGAAACTGATGGTTCAATCAGCAGTATTGTGGAGTTCACACTTTTCCCCGAAGCTGTAAAACCAGCAGAGAACACAGAGAAGATAGAGAAGTTGACCATGCCATCTAAACTTCCCAGGATCCCCCAGAAGCAGGGTCCATTGAGGTCTTCTCGGTTGCCATCGTCAAGCAAGAGTGCCTCGAAGGTTGCATCAAGTTCTAGGAAAACCCCTGCTGTTGCCAGCTCATCCTCGACCAAGCTCACCAAAAGATGGCAGTAA 3216 41.6 MNPLSELHISENGSFKNSNEGYNPEVAEQMESFDGTIEGNLSQRTQLVEWLNGILPYLSLPLEASEEDLRACLIDGTVLCGILNRLSPGSIEMGGISESYLENLKRFLAAMEEMGLPRFELSDLEQGSMDAVLQCLQTLRAHFNFNIGGENIRNYSRKKWNLCEVECLEGFDRSQGDASSHGEHSDEFVEERRNSLDSKFQHVLRRSVFSEPLAASIHHVGHRFQEGFQLKQGGYADFPAAKISELVEQKSLENTPTHLLFSILINILDGSIERKNGDVPHRVAFLLRKIIQEIEQRISTQAENLKNQNNLYKAREEKYQSRIRVLETLATGTTEENRVVMHQLQQIKIENTKIEERKKLEEQDVDRLMKEKDRSDNEILALKEELEMARKTHEKHCLQLETQAKETKVELEKKLKELENLLTDSKKKVKELEAFSESKSRRWKRKELRYQNFVDSQFGALQELRVASDSIKREVLKTHRTYSEEFNYLGMKLKGLTEAAENYHMVLEENRRLYNEVQDLKGNIRVYCRIRPFLPGQSEKYTTIEYIGENGELVIVNPAKQGKDSRRLFKFNKVFSPAATQEEVFLDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPDVSSKVDWGVNYRALNDLFHISQSRKSSIMYEVGVQMVEIYNEQVRDLLSSDGSQKRYPFLQFNTSVPDASMHPVKSTADVLELMNIGLMNRAVGATALNERSSRSHSILTVHVRGLDLETDAVLRGSLHLVDLAGSERVLRSEATGDRLREAQHINKSLSALGDVIFALAQKSPHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVDSYSETISTLKFAERVSGVELGAARSNKEGRDVRELMEQVAFLRDSNAKKDLEIEQLQQVNVNSTSGKRGMNSLRYGSSSPRRHSIGASRQSHRLPQGKGSGLVQKAASDLDNCSEYSDKHSEAGQNFTEDIELLGFGDADSEERLSDISDGGLSMGTETDGSISSIVEFTLFPEAVKPAENTEKIEKLTMPSKLPRIPQKQGPLRSSRLPSSSKSASKVASSSRKTPAVASSSSTKLTKRWQ* 1072
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2977849 2988157 + Vvi2g320 Vvi2g320 783019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g320 1071 MobiDBLite consensus disorder prediction 1033 1071 - -
Vvi2g320 1071 CDD CH 42 144 IPR001715 GO:0005515
Vvi2g320 1071 SUPERFAMILY Calponin-homology domain, CH-domain 42 143 IPR036872 -
Vvi2g320 1071 SMART kinesin_4 521 855 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi2g320 1071 MobiDBLite consensus disorder prediction 891 926 - -
Vvi2g320 1071 Pfam Calponin homology (CH) domain 42 144 IPR001715 GO:0005515
Vvi2g320 1071 Gene3D Kinesin motor domain 465 849 IPR036961 -
Vvi2g320 1071 ProSiteProfiles Calponin homology (CH) domain profile. 41 144 IPR001715 GO:0005515
Vvi2g320 1071 Pfam Kinesin motor domain 529 845 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi2g320 1071 ProSitePatterns Kinesin motor domain signature. 747 758 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vvi2g320 1071 PANTHER KINESIN-4-LIKE ISOFORM X1 952 1071 - -
Vvi2g320 1071 PANTHER KINESIN-4-LIKE ISOFORM X1 8 952 - -
Vvi2g320 1071 SMART ch_5 43 142 IPR001715 GO:0005515
Vvi2g320 1071 Coils Coil 344 435 - -
Vvi2g320 1071 MobiDBLite consensus disorder prediction 1014 1071 - -
Vvi2g320 1071 Gene3D - 35 144 IPR036872 -
Vvi2g320 1071 PRINTS Kinesin heavy chain signature 598 619 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi2g320 1071 PRINTS Kinesin heavy chain signature 717 734 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi2g320 1071 PRINTS Kinesin heavy chain signature 748 766 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi2g320 1071 PRINTS Kinesin heavy chain signature 797 818 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi2g320 1071 Coils Coil 291 322 - -
Vvi2g320 1071 MobiDBLite consensus disorder prediction 1 21 - -
Vvi2g320 1071 ProSiteProfiles Kinesin motor domain profile. 523 847 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi2g320 1071 MobiDBLite consensus disorder prediction 891 935 - -
Vvi2g320 1071 PANTHER KINESIN-LIKE PROTEIN KLP-3 8 952 - -
Vvi2g320 1071 PANTHER KINESIN-LIKE PROTEIN KLP-3 952 1071 - -
Vvi2g320 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 523 884 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g320 K10406 KIFC2_3; kinesin family member C2/C3 - vvi:100256435 2004.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g320 Vvi16g714 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g320 Blo02g01110 Blo03g00212 Bda06g00112 Bda08g00516 Bpe05g00646 Bpe07g00107 . Bma14g00667 . . Cma02g01449 Cma15g01228 Car02g01216 Car15g01107 . . Cpe05g00339 . . . . . . . Cla10g00365 Cam10g0377 Cec10g0397 Cco10g0390 Clacu10g0383 Cmu10g1218 Cre10g0632 Cone8ag0301 Cone12ag0307 . . . Csa05g00279 Chy09g01230 . . . . . . Bpe11g00603 Bma05g00820 Bma12g00075 . Cmo02g01485 Cmo15g01292 . . . . . Cpe13g00155 Bhi12g00265 . . . . . Lcy12g1649 Cla01g00260 . Cec01g0258 Cco01g0273 . . Cre09g2254 Lsi09g00255 . . Cme09g01765
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002869 5 3 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 1 2 54