Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g321 ATGGAATCCAAGTCTTGTGAGATTCTGAGCACAGCCGAGCTCATCTCAGCAGTTGGCCAAATATGGGATTGTGCAAGCCGTCCGCTTTCTATTTTCCAACCCAAAGCAAATTCAAAACACAATGACACGGACAGTAATAAAGAGAAGGTATTATGTTATCTTGGTGGAGAAGGATATGTCAGGGTACCTACTTCAGCCAATAGTAAATACTTCTGCATTGATTTGAAGACTGCTAGCCTTTTTTCACCCATGGTGCAGCCAAACATTGAGCATTTAAATATAACCCAAAAAATGTCTTTGTTTGAACCTGGTAATGGAAACAATGCACATTCTTTTTTCTTGAGATGTCTGCGTGGTGGTGCCAACATGCCTAATGAGACTTGGAAGGAAATGGGGCTTACAAATGTAGGAATCTCATATGATTTGGGAAATATATATAGATGGATGAGTAAAATAACTCTTGATACACTAAGATCTCCGGTTGATATTACCCAAATTGAGAACATGAAAACTAAAGAATGTTGCATTTCAAAAGATGCAACTAATACTGCAGGTTGCGGAATTAACATTGATGTCGCTATCCCTGCAAATCACCCGGCCACTGAAAGTGCTGACTGTTATACTGGTGTTACAGAAGGTAATGGGGCAAATGAAAGGGTGATGAATATAGGGGTGTCTATTAGCTCTTTGTGCACAGACTATTTCCTTGGGGCTGACCATGGTATAGCAGCTGGTGATAGTATTTCTAGAACCCCAAGTTCTGAACTTCATGCAGACTCTAATTTCTTGTCATCCACTGATTTTGCTTTTGAAGAATGTCAACACAAAACAGAGGGTGTTGATCGACAGAAAGAGTTTGTCACTAAGGATAAACTGAAAATGGAAACTTGCCCATCAAAACAGGATAAACATCATTATGTGCTTGCAAAACAAGAGCATGCTTTTGCAGGAGCATTCGCTGGAGTATTTGTTAGCCTTTGCCTGCACCCTGTAGATACAATTAAGACTGTCATTCAATCTTGTCAGGCAGATCAGAAGTCTATCTTCTCTGTTGGAAGATTAATTATTTCTCAAAGAGGTTTAGCAGGATTTTATCGTGGAATTACTAGCAATATTGCTTCTTCAGCACCAATTTCTGCAGTTTATACCTTTACATATGAATCGGTGAAAGGAGCTTTGCTTCCTCTTTTTCCCAAGGAATGTCACTCTATTGCACACTGCATGGCAGGTGGTTGTGCAAGCATTGCTACTTCTTTCATTTTTACTCCCAGTGAGCATATAAAGCAACAGATGCAAATTGGTTCACACTATCAAAACTGCTGGAATGCTTTGGTTGGAATTATTAAAAAGGGCGGTTTGCCTTCACTATATGCGGGTTGGGGGGCTGTGCTCTGCCGAAATGTTCCACACTCTATCATTAAGTTTTACACATATGAAAGCTTGAAGCAATTGATGTTGCCATCACTGCAGCCTAATGCCAAACCCAACACATTACAGACGCTAGCTTGTGGAGGACTCGCTGGGTCTACTGCTGCTTTTTTTACTACTCCTTTTGATGTGGTGAAGACAAGATTACAGACACAGATTCCTGGATCCATGAAACAATATAATAGTGTGTTTCACACACTTCAAGAAATAAGCAAGCATGAAGGGTTGAGAGGTCTCTACAGGGGATTAACTCCGAGACTGGTAATGTATGTGTCACAAGGAGCGCTCTTTTTTGCATCATATGAATTTTTCAAGAGTTTATTTTGTTTGGAGATGCCAAAACTTCATGCACAAACGATCCCGCACAAGCAATACATGGAAGGTGATTCAACATCATCATTGCCGTCTGCACCATCATGA 1848 40.42 MESKSCEILSTAELISAVGQIWDCASRPLSIFQPKANSKHNDTDSNKEKVLCYLGGEGYVRVPTSANSKYFCIDLKTASLFSPMVQPNIEHLNITQKMSLFEPGNGNNAHSFFLRCLRGGANMPNETWKEMGLTNVGISYDLGNIYRWMSKITLDTLRSPVDITQIENMKTKECCISKDATNTAGCGINIDVAIPANHPATESADCYTGVTEGNGANERVMNIGVSISSLCTDYFLGADHGIAAGDSISRTPSSELHADSNFLSSTDFAFEECQHKTEGVDRQKEFVTKDKLKMETCPSKQDKHHYVLAKQEHAFAGAFAGVFVSLCLHPVDTIKTVIQSCQADQKSIFSVGRLIISQRGLAGFYRGITSNIASSAPISAVYTFTYESVKGALLPLFPKECHSIAHCMAGGCASIATSFIFTPSEHIKQQMQIGSHYQNCWNALVGIIKKGGLPSLYAGWGAVLCRNVPHSIIKFYTYESLKQLMLPSLQPNAKPNTLQTLACGGLAGSTAAFFTTPFDVVKTRLQTQIPGSMKQYNSVFHTLQEISKHEGLRGLYRGLTPRLVMYVSQGALFFASYEFFKSLFCLEMPKLHAQTIPHKQYMEGDSTSSLPSAPS* 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2989813 2995888 + Vvi2g321 Vvi2g321 783020

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g321 615 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 2 603 - -
Vvi2g321 615 ProSiteProfiles Solute carrier (Solcar) repeat profile. 495 583 IPR018108 -
Vvi2g321 615 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 2 603 - -
Vvi2g321 615 Pfam Mitochondrial carrier protein 312 393 IPR018108 -
Vvi2g321 615 Pfam Mitochondrial carrier protein 496 584 IPR018108 -
Vvi2g321 615 Pfam Mitochondrial carrier protein 402 485 IPR018108 -
Vvi2g321 615 SUPERFAMILY Mitochondrial carrier 312 580 IPR023395 -
Vvi2g321 615 Gene3D Mitochondrial carrier domain 401 610 IPR023395 -
Vvi2g321 615 Gene3D Mitochondrial carrier domain 282 400 IPR023395 -
Vvi2g321 615 ProSiteProfiles Solute carrier (Solcar) repeat profile. 401 484 IPR018108 -
Vvi2g321 615 ProSiteProfiles Solute carrier (Solcar) repeat profile. 308 392 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g321 - - - vvi:100853340 1244.57
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g321 . . . . . . . . . . Cma02g01450 . Car02g01217 . . . Cpe05g00338 . . . . . . . . . . . . . . Cone8ag0303 . . . . Csa05g00280 Chy09g01229 . . . . . Bpe08g01484 . . . . Cmo02g01486 . . . . . . . Bhi12g00262 . . . . . . Cla01g00261 Cam01g0267 Cec01g0259 Cco01g0274 Clacu01g0266 Cmu01g0255 Cre09g2252 Lsi09g00256 . . Cme09g01764
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006178 1 3 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 4 6 1 37