Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g322 ATGGAGAAGCAGCAACCCAGGCAGCGGAGGAGGAAGAAGATCAAGCTCCCAGAGGAGGAAGAGGAGAGGGAGAAGGAGACGCAAAGCGGGGACGAGGAGGCACCCCAGGAGGACGCCAAGCCGATTGGAGACGCCGTTAGGGTTTCGGGTAAGGGGAGAGGAAGGAGGAGCCACTACGAGGCTTTCGAGTTCGATGGAAACCGATACGATCTGGAAGATCCTGTGCTTTTAGTTCCTGAGGATGAAAAGCAAAAGCCTTATGTGGCAATTATTAAGGACATTACTCAGACTAGAGAGGGAAGCATTATGGTAACTGGACAGTGGTTTTATCGTCCTGAGGAGGCTGAGAAAAAAGGAGGTGGAAGCTGGAAATCAAGTGATACAAGGGAGCTGTTTTACAGTTTCCACCGTGATGAGGTTCCAGCAGAATCTGTAATGCACAAATGTGTGGTGCATTTTGTTCCTTTAAATAAGCAACTCCCAAATCGTAAACAGTTTCCTGGTTTTATTGTTCAAAGGGTATATGACACAGTGGAGCGGAAACTTTGGAGGCTGACTGATAAAGACTATGAAGATAACTTGCAACATGAAGTTGATCTTCTTGTTCAGAAAACACGATCCCGTTTGGGGGAACTTTTTGACATTGAAATTGAAGAAGTTGTAGCTGAGCAGGAAGATCAGACGAAATCCAAAAGGACTCTCAGAAAAAAGAATATGTCACCTCTTGATGTTACAAGGGATGATGAAGCAACAACCAGATTTGACCAACATTTAAAGCCAGAAACACCAGGGAGCTGTACAAGTAACATGTCGGAATACTGCACTATTTTAGTGAACTTTAAGGCATTAACTGGAGAAACTCATCGTGACAAATGGCTGGAGAAGCTTCTTCAAGGAATTCAGTCAGTGTGCTGTTCTGATGATGATGTGCACAGAGATGATAAAGAAAAAGGTGGATCTGGTGACAGTGATCATGCAAGTGATAATAACCGCACAGAAACTGCACATGGATCTGACGCAAAGAGTCTTACTGCTGGCAGATCTTTTATCTGGCCAGATGCTGCTGTTCCAGCAGTGACTGCTCTTGAGCAAGCATCACAAGATGCTTTTTCTTCAGATTTCCAGAAGTACAACCAAAAAATGCGACAGTTGGTGTTCAATCTCAAGAACAATCCACTATTAGCCAGGCGTCTACTAAATGGAGAATTGGAACCTTCAAAAATACTAAACATGTCACCTAATGAGTTAAAGGAGGGTTTAACGGCAGAAGAAACAGCAAAGAAGGAGCCTGAGGAGTTGAAGCGAATGCAGATGACCGATGCTCGCTGCAAAAGATGCCAGGAAAAAAAAGTGGGTGTAACAGACATCATCCATGCAGGAAATGCAGACCGCTACCAGTTGGAGTGCATTGCCTGTGGTAACAACTGGTATGCTCCCAGAGATGAGATTTCCACATTAAATGATGGTCCAAGTTCTGCCAGGAGTGTAGGTACAGCACCATGGGCCACTGCCAAGTTTGAAGATGTTGAGAAGAAGCTAGTGAGTCCCCGTGAATCTGAGAAGCTGGAAGCCTTGAAGAAAACAACTGAACCATACATGCCAGTCTTGGACTCTCAGAAATCATTCAGCAAGCCTAAAAACGAAGACAACCCTGCATCTGCTAAAACTGGTGACAATTCTGGATCTACTAAGCTTGACATGGAGTTGGATTTTGAAAAATACTGTAGTTTGGGTCTGAGTCCTAGAACTGTTCTTCCATCTAATCAGCGTTACTTGGGAATTGGAAAGAGAAATACAAAGGAAAAGCCCGCACGTAGAAGTAACCTTTTGAGCATAGAGGAGGACTTTGCAGAGATAAGCTTTGGTGATTTTCACAGTTTTTCTTGTAAGAGCATTCGATATAGACCTGTTGGTGTGGAAGGTAATGTAGAGCTGAAACGGGGTTCCATATATCAGAGCTCTGAAGAAGTAAGGAAGAAGAAGAAAATGGGGGCTGTTGAGGGGAGGAGAAAGATTGAATTGTCCCGTAGTAGTGATTCATCTTTCCCCTTTAGGATAGTCGACTCCTTAGAAAATCACTCTGCTGAAAGTGCAGAAAGAGACTCAATCAGAGATTCAAAGTTCAAATGTGATGATGTTGTTGGTCCTCAAAATGATAGCAATGACCTCTTGGAAAGAGAGACGGTTCTGACTTTGTACAAGTCATTATCTGCTAAGGTAGCATTGCCCCATTCGCCTTCTCAGTCAGAAAGTGATTACTCGCGGACCAGTCCAAAAGCCCGATTTAACCCTATTAGAAAGATGTTTGATCCATTCACAAAGTCTAAATCTCAGCGAAGTCCTTTGCATTCTGTAGTAAAGCCTGGTGGAGTCACAAAAGGCCCGGCAAGTGGCAGAAATAATAAAACGTTTCGGAAATCTTTGTTGCATGACTTTGCAAATACGACACAGCATGCTGCTGAACCTGCCAAAGGTTCTAATGAAGGCTTGGCTGGGCAAAGTTTGGAGTTGGATGATGTGTCTGATGATGCAGTGAAGCTCAAATGTCAAACAAACCATGCTTCTAATCATGATGATTTTGATGCTGCAGTTCCGTACCCTTGGGCACCTGCAAATCTGCATCCTGATCTTGAAATAGCAGCTATTGTTATTCAAGTCCCATTTGAGAAGAGAGAAAGTTTGAAATACAGGAGAGGGGAGAACCCAGCAAAAGTGAAGGTGGTAACTGCAAGTGGGAACCATGGTTTGCCAAGTGGTGATAGTCGAGGCCCTTCATCATTACTGGATCGGTGGAGGTTGGGTGGAGGCTGCGACTGTGGGGGCTGGGACATGGCATGTCCACTTATCGTGTTTGACAATCCCAGTATTCTACGTGTTGAAGATTGTCCACTCATGGAGAGTCCGCAGCCTTTGGAACTCTTTGTTCAGGGAGCCAAAGAGAGAGTGCCTGCATTGACCATAACAAGGGTCGAGGAGGGACAGTATGCAGTTGATTTTCATGCACAGTTATCCACATTACAAGCATTCTCCATTTGTGTTGCTATGTTGCATAGTTCAGAAGCTTTCTCTACTACTGGGGATGAGAAAAACAGACACTTGTTGCATTGCAATTCACTGAAAATGCTTATAGAGGAGGAAGTAAAATTCTTAATCGAAGCAGTCACTGAAGAGGAGAAGAGGAAAGTCCCTAAGCTGGTGGAAGGAACACTGCCACCTTTTGTATTCAACCCACCCTTTTCTCCCATAGCTCGGGTCTAG 3258 44.32 MEKQQPRQRRRKKIKLPEEEEEREKETQSGDEEAPQEDAKPIGDAVRVSGKGRGRRSHYEAFEFDGNRYDLEDPVLLVPEDEKQKPYVAIIKDITQTREGSIMVTGQWFYRPEEAEKKGGGSWKSSDTRELFYSFHRDEVPAESVMHKCVVHFVPLNKQLPNRKQFPGFIVQRVYDTVERKLWRLTDKDYEDNLQHEVDLLVQKTRSRLGELFDIEIEEVVAEQEDQTKSKRTLRKKNMSPLDVTRDDEATTRFDQHLKPETPGSCTSNMSEYCTILVNFKALTGETHRDKWLEKLLQGIQSVCCSDDDVHRDDKEKGGSGDSDHASDNNRTETAHGSDAKSLTAGRSFIWPDAAVPAVTALEQASQDAFSSDFQKYNQKMRQLVFNLKNNPLLARRLLNGELEPSKILNMSPNELKEGLTAEETAKKEPEELKRMQMTDARCKRCQEKKVGVTDIIHAGNADRYQLECIACGNNWYAPRDEISTLNDGPSSARSVGTAPWATAKFEDVEKKLVSPRESEKLEALKKTTEPYMPVLDSQKSFSKPKNEDNPASAKTGDNSGSTKLDMELDFEKYCSLGLSPRTVLPSNQRYLGIGKRNTKEKPARRSNLLSIEEDFAEISFGDFHSFSCKSIRYRPVGVEGNVELKRGSIYQSSEEVRKKKKMGAVEGRRKIELSRSSDSSFPFRIVDSLENHSAESAERDSIRDSKFKCDDVVGPQNDSNDLLERETVLTLYKSLSAKVALPHSPSQSESDYSRTSPKARFNPIRKMFDPFTKSKSQRSPLHSVVKPGGVTKGPASGRNNKTFRKSLLHDFANTTQHAAEPAKGSNEGLAGQSLELDDVSDDAVKLKCQTNHASNHDDFDAAVPYPWAPANLHPDLEIAAIVIQVPFEKRESLKYRRGENPAKVKVVTASGNHGLPSGDSRGPSSLLDRWRLGGGCDCGGWDMACPLIVFDNPSILRVEDCPLMESPQPLELFVQGAKERVPALTITRVEEGQYAVDFHAQLSTLQAFSICVAMLHSSEAFSTTGDEKNRHLLHCNSLKMLIEEEVKFLIEAVTEEEKRKVPKLVEGTLPPFVFNPPFSPIARV* 1086
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2997435 3014259 - Vvi2g322 Vvi2g322 783021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g322 1085 MobiDBLite consensus disorder prediction 1 40 - -
Vvi2g322 1085 Pfam Transcription factor S-II (TFIIS), central domain 284 436 IPR003618 GO:0006351
Vvi2g322 1085 SUPERFAMILY Elongation factor TFIIS domain 2 285 417 IPR036575 GO:0006351
Vvi2g322 1085 MobiDBLite consensus disorder prediction 1 52 - -
Vvi2g322 1085 MobiDBLite consensus disorder prediction 545 563 - -
Vvi2g322 1085 CDD BAH_plant_3 49 195 - -
Vvi2g322 1085 MobiDBLite consensus disorder prediction 308 335 - -
Vvi2g322 1085 Pfam Domain of unknown function (DUF3527) 897 1019 IPR021916 -
Vvi2g322 1085 Pfam Domain of unknown function (DUF3527) 817 894 IPR021916 -
Vvi2g322 1085 Gene3D - 276 418 IPR036575 GO:0006351
Vvi2g322 1085 Pfam BAH domain 69 182 IPR001025 GO:0003682
Vvi2g322 1085 MobiDBLite consensus disorder prediction 741 758 - -
Vvi2g322 1085 ProSiteProfiles BAH domain profile. 67 186 IPR001025 GO:0003682
Vvi2g322 1085 SMART mid_6 328 426 IPR003618 GO:0006351
Vvi2g322 1085 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 4 555 - -
Vvi2g322 1085 SMART BAH_4 67 186 IPR001025 GO:0003682
Vvi2g322 1085 MobiDBLite consensus disorder prediction 308 341 - -
Vvi2g322 1085 Gene3D - 1 167 IPR043151 -
Vvi2g322 1085 MobiDBLite consensus disorder prediction 740 802 - -
Vvi2g322 1085 MobiDBLite consensus disorder prediction 517 564 - -
Vvi2g322 1085 ProSiteProfiles TFIIS central domain profile. 288 444 IPR003618 GO:0006351
Vvi2g322 1085 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 4 555 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g322 - - - vvi:100251356 1102.04
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g322 . . . . . . . . . . Cma02g01453 Cma15g01226 Car02g01219 Car15g01106 . . Cpe05g00334 . . . . . . . . . . . . . . Cone8ag0305 . Cone6ag0779 Cone9ag0784 . Csa05g00281 Chy09g01228 . . . . . . . . . . Cmo02g01488 Cmo15g01291 . . . . . Cpe13g00157 Bhi12g00260 . . . . . . Cla01g00265 Cam01g0272 Cec01g0265 Cco01g0280 Clacu01g0272 Cmu01g0260 Cre09g2248 Lsi09g00260 . . Cme09g01763
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006093 0 1 1 0 0 1 1 1 1 1 1 1 2 1 1 1 1 4 3 1 1 1 1 1 1 1 1 4 4 1 39