Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g323 ATGGTGGATTCAATTGCTGCAACATCTCTGCTAGGGCATCGACCCCTATGCGGAGGATTGGGATTATCTTGTAAGGACATCTCATACAAACGCAGACTATCTGATGTTTGTCGGTTTCCATTGATGGAATTTCTTGGTAGAAGGATTAGTGCTTCTCCATATTTGCCTAGGAGGAGAGGAGGTGATCGGTTAGGGGCTTTGTCTATTAAGGCTCTTGCAATGGAGTTGACCAAAGAGGCGCATTCCTATAAAGAAGAGAGAATTCCCAGGAATTTGAGATACCGAATTGATACGGGAATTGATAGAAAACCTGGCTTATGGCCACCTGAGAACAAGGCGGATAGCTCTTCCCTACATAATCCCTTGCTTAGGCAAGAAAGAATGGGTTGTGGATGGTTAGGTGCTATATTTGAATGGGAAGGAGTCATAATTGAAGATAATCCTGATCTCGAGAACCAAGCCTGGTTAGCACTTTCTCAAGAAGAGGGAAAATCCCCTCCCCCAGCTTTCATTCTTAGGAGAATAGAAGGGATGAAGAATGAGCAAGCCATTTCTGAAGTTCTTTGCTGGTCCAGAGACCCAGCTCAGTTGAGAAGAATGGCTTCTAGAAAAGAAGATATTTACCAAGCTCTGCAAGGTGGGATGCATAGATTACGCACTGGATCTCAGGAATTTGTGAATGTTCTTATGAATTACAAGATACCAATGGCACTGGTTTCAACTCGACCTAGAAAAACTCTTGAGACTGCAATTGGAACCATTGGAATAGAGAGTTACTTCAGTGTGATCGTAGCAGCAGAGGATGTTTACAGGGGGAAGCCTGATCCTGAGATGTTTGTGTATGCAGCGCAGCTGCTAAACTTTATACCTGAAAGGTGTATTGTGTTTGGGAACTCAAATCTAACTGTGGAGGCTGCTCATGATGCCCGGATGAAGTGTGTGGCTGTTGCCAGCAAGCATCCTGTTTATGAGCTTGGGGCTGCGGACTTGGTCGTGAGGCACCTGGATGAGCTTTCGGTCGTGGACTTAAAGAACCTTGCTGACATTGAATCAACTGAATTTGGGCCTGGAGAGCCAGAAACGGAGATGGAGCGGGAGGAGGATTCATAG 1110 45.41 MVDSIAATSLLGHRPLCGGLGLSCKDISYKRRLSDVCRFPLMEFLGRRISASPYLPRRRGGDRLGALSIKALAMELTKEAHSYKEERIPRNLRYRIDTGIDRKPGLWPPENKADSSSLHNPLLRQERMGCGWLGAIFEWEGVIIEDNPDLENQAWLALSQEEGKSPPPAFILRRIEGMKNEQAISEVLCWSRDPAQLRRMASRKEDIYQALQGGMHRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLETAIGTIGIESYFSVIVAAEDVYRGKPDPEMFVYAAQLLNFIPERCIVFGNSNLTVEAAHDARMKCVAVASKHPVYELGAADLVVRHLDELSVVDLKNLADIESTEFGPGEPETEMEREEDS* 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3019593 3022040 + Vvi2g323 Vvi2g323 783022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g323 369 PANTHER 5-AMINO-6-(5-PHOSPHO-D-RIBITYLAMINO)URACIL PHOSPHATASE, CHLOROPLASTIC 2 368 - -
Vvi2g323 369 CDD HAD_BPGM-like 195 318 - -
Vvi2g323 369 Pfam Haloacid dehalogenase-like hydrolase 149 316 IPR041492 -
Vvi2g323 369 SUPERFAMILY HAD-like 135 338 IPR036412 -
Vvi2g323 369 Gene3D - 135 333 IPR023214 -
Vvi2g323 369 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 251 316 IPR006439 -
Vvi2g323 369 Gene3D Putative phosphatase; domain 2 145 218 IPR023198 -
Vvi2g323 369 PANTHER BETA-PHOSPHOGLUCOMUTASE-LIKE ISOFORM X1 2 368 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g323 K22912 PYRP2; 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.104] - vvi:100261521 719.539
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g323 . . Bda06g00102 . . Bpe07g00109 . . . Cmo16g00641 . . . . . Cpe14g00503 . . . . . . . . Cla07g00768 Cam07g0825 Cec07g0883 Cco07g0860 Clacu07g0804 Cmu07g0809 Cre07g1163 . . Cone6ag0778 Cone9ag0783 . . . Cme07g01627 . . . . . . . Bma12g00076 . . . . Cma16g00591 . . . . . . . . . . . . . . . . . . . . Chy07g01214 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007776 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36