Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g327 ATGTATGGCAGTGACTTGGATACTTCTGTATATGGGAGTGGTTTTCCTCGTGTAAATGACAAGAAACCAGAATCCGTTGAGGATGAGATTTGGGATAAATACTGTGCTAGCCCATGGAATCTCAACAATTTGCCCAAGTTGCAGGGTTCGATGCTTCGAGCTGTCCATAATAACATTGCTGGTGTAATGGTACCCTGGCTGTATGTTGGAATGCTATTCTCATCATTTTGTTGGCATTTTGAGGATCACTGTTTCTATTCAATGAATTATCTACACTGGGGAGAGCCAAAATGCTGGTACAGTGTCCCTGGTAGTGAAGCCATTGCTTTTGAGAAGGTGATGCGGAACTGTCTTCCTGATCTATTTGATGCCCAACCGGATCTGCTCTTTCAGCTTGTGACCATGCTGGACCCATCTGTGTTGCAAGAAAATGGAGTTTCTGTTTATAGTGTAATTCAGGAGCCTGGAAACTTTGTCATCACCTTTCCCAGATCTTATCATGGCGGTTTCAATTTTGGCTTAAATTGTGCCGAGGCTGTCAATTTTGCTCCTGCTGACTGGCTTCCTCATGGTGGATTTGGAGCAGAGCTATATCAGCTGTATCGGAAAGCTGCTGTTTTATCTCATGAAGAGCTGCTCTGTGTGGTAGCCAAGGCTAATGACTGTGATAGCAAAGCATTACCTTATTTGAAGAAAGAATTGCATAGAATATATGCCAAGGAGAAAAATTGTAGAGAGGGACTCTGGAGCAATGGCATCATCAAGTCATCTCCTATGTCACCAAAGAAGTGTCCTGAATTTGTGGGTACTGAAGAGGATCCAACATGCATTATATGCCAGCAGTACCTGTTTCTTTCTGCTGTTGTTTGCTGCTGTAGGCCATCTGCTTTTGTATGTCTTGAGCATTGTAAGCATCTTTGTGAATGCAAACCCAACAAACATCGCCTTCTGTACCGTCACACACTGGCAGAATTGAAGCAGTTGGTGCTGTTGATAGATAAATATAACTTTGACGAGACACCCCAATGTAGAGATTTACAAAGGCAGCTTTCATGTTCTGATGATTCGAATGCTTTGACAAAAAAGGTGAAAGGTGGCCATGTTTCTCTCGCCAAACTGGCAGAAGAATGGATTTTGCGTTCTTCTAAGATTTTTCAGATTCCATTTTCCAGAGACGCTTATGTTAATGCATTGAAGGAAACTGAACAATTTCTTTGGGCTGGTTCTGAAATGGATGCGGTGAGGGCCGTGGCAAAGAATTTGATTGAAGCCCAGAATTGGGCTGAAGGCATAAAAGATTGTCTTTGTAAAATTGAATCATGGTCATGTAATCGGAGCCACAATTTGGAGAAAGTAGATTTGGAACATGTTAACAATTTTCTGAATTTGAATCCTCTGCCTTGCATTGAGCCTGGGCATCTTAAATTAAAGGGTTATGCAGAAGAGGCAATGATTTTGGTTCAGGAAATTGATTCTGCCTTGTCAACGAGTTCAAAATCCTCTATCCCTGAGTTGGAACAGCTATATTCCAGAGCGTGTGAGGTACCTATCTATGTAAAGGAAATGGAGAAGTTGATGGCAAGGATTTCTGCATTGAAGATGGTTATCAATATTATAGCATGGTTTTCTGATTCTTTTTTCCTTTCCAATCTGATGATTTTGATGAAATTTTTTCATCCACTTTTTGTTTGGGTGGACAATGTAAAAAAATGCATCCTTGAGAAATGCCCTGCAGCAATTGAGGTTGATGTCCTTTACAGGTTAAAGTCAGAGATGCTGGAGCTTCAAGTTCAGCTCCCTGAAGTAGAAATGCTTATGGATCTTTTACGACACGTTGAATCATGTCAGGCCCGATGTAATGAGATATTGAATGGTCCTATTAATCTCAAGAATGTTGAAGTGCTTCTTCAAGAATTGGAAAGCATTACTGTCAACATCCCAGAGTTGAAACTTCTGAGGCAATATCATGGTGATGCTGTTTCCTGGATTTCACACTTTAATGATGTTCATGTGAACATTCATGAACGGGAGGATCAAGAAAATGTAGTTGATGAGTTACAGTGCATTCTAAAGCAGGGATTGTTGTTGAGAATTCAAGTCGATGAGTTGCCTCTTGTGGAGGTTGAGTTGAAGAAGGCTTATTGCAGGAAAGAGGCTCTGAAGGCGCGTCGTACTAAAATGACTCTGTTCTCCATCCAGCAACTAATGGAGGAGGCTGCCATGCTACAGATCGAAGGAGAGCAATTATTTGTTGATGTTTCTGGAGTACTTGCAGCTGCTATGCATTGGGAAGAAAGAGCAGCACATATTTTTGCAACTGAGGCTCAGATGTCTGACTTCGAGGATGTTATAAGGACTTCAAAGGACATACATGTGATTCTACCTTCTCTTGATGATGTCAAGGATGCAATTTCAATGGCTAAGTCCTGGTTAAAGAACTCTAAGCCATTTTTAGGGTCTTCTTTTCCTGCCGCACATCCCTCCTGTTCCTTGCTGAAAGTTGAGGCACTGAAGGAGTTGGTTTCTCAGTCAAAGCTTTTGAAGATATCCCTGGAAGAACGAACCATGATCCATTCTGTTTTAAAGAATTGCTTGGAATGGGAGCATGATTCCTGCTCTCTGTTAGAAGAAGTGGATTGCCTATTTAACACAAATAATATTGACAATGCATTGATTAATGGTCTTATTCCAAAAATCGAGCATCTTGTTACTATGATTGAATCTATCTTGGAAACTGGTTTATCTCTTGGTTTTGATTTTGATGAGATTCCAAAACTTCAAAATGCTCGCTCTATACTGCAATGGTGCAGTAAGGCTCTTTCTTTCTGTTCTGTAGCTCCTGCACTTCCGGGGATCGAGAGCTTGATGGAGAATGCAGAACACCTTCCTGTTACATGCGCCTCCAGTGCTCTCTGCAGCTCATTGATTGATGGGGTTAAATGGCTTAAGAAAGCATCAGAGGTGATTCCTGTTTCATGCAATGGCAAAATATGCAAATTAAGTGATGCCGAAGAAGTTCTTTCCGAAGTTCAGAGGATTAAAGTTTCCTTTCCATTGATGGTTGGTCAACTTTTAAAAGCTATTGAGAAACATAAGTTGTGGAAAGAGCAAATTCTTATCTTTTTTGGTTTGAAAACTGAAGAACGATCTTGGTCTAAATTGTTACAACTTAAGGTAATAATATGTTTCATGTATTTTGGAATTTCTTTCAATGTCATACAGATTAAACATACTCTAGATAGATCTTTGTATATATACAAGAAGTCCAGGGGTTGCAATCCCAGAGATCCATGCATTCACTGCTTCAGTGACATTAAGGATCAGGAGTTACTAACCTGTTCGATATGCAAGGACTGCTACCATTTGCAGTGCCTAGGAGCAACACTAGGTCATCAAAGTGATGCAGAAGCATATGTATGCTCTTATTGCCAATTCATAGGGAGTGGGTCCATTTCTCGAAATGGTGGTGCTCTGAGATTTGGAGGGAAACGCCCAGAACTGAACATGCTCATTGAGCTTCTGTCTGATGCTGAAGGTTTATGTGTAGGGTGTGTGATTGAAGAAAGAGATGTAGTACAGCAACTTGTGGAGCTAGCTATTGCCTGCAAAGATTGTCTAACAGAATTGACAGACTTTACCTTAGCTTATCTTAATAGAGATCTCAGCATCATCTCAGAAAAACTAACTACTGCTCTGAAGGCAGTTGAAATGGCAGGTGTCTATTATAATCATGGAAACAACAGACTTGAGCTGGCATTAGCAAGAAACTCATGGAGAGTCAGGGTGAATAAATTGTTAGAGGATTCTCAGAAGCCCCTGATCCAACATATTCAAAAAATTTTGAAAGAGGGATTGGCCATAAGCATACCACCTGAAGATCACTTCAGGCAGAAACTTACAGAATTGAAGTGCATTGGCTTGCAATGGGCAGAAAATGCTAAGAAGGTTTCCATGGACTCTGGGGCACTTGGATTGGATGAAGTTTGTGAACTTATCACACAGGGTGAAAACTTGCCTGTTCATTTTGAAAAGGAACTTAAGTTATTAAGAGCTCGAAGTATGCTTTACTGCATTTGCCGAAAGCCCTATGATCAGAGAGCAATGATTGCCTGTGATCAATGTGATGAGTGGTATCACTTCGATTGTATCAAATTATCTTCAGCACCAAAAATCTATATCTGCCCTGCATGTAAGCCTCACACAGGGGAGCTATCTGTTCTACTGTCAGTGAATAAGGAGAGATCAACTGGAGCTAAATATGGAGAACCTCAGACACCCTCTCCACCACACACAGAATCAAGAAGGAAAAATATAGAAGCTAAGCCGAGCCTAAAGCAAATGATGCCTGCAGCTATGGATCACGGTAATATCTTAAGGTATTCTGATGGAATTGATTGTTTGTTTTGGAGAAACCGGAAGCCTTTCAGAAGAGTGGCTAAAAGGCGAGCTGAGGTTGAAAGCCTCTCCCCATTTTTCCATATACAGTGA 4488 40.91 MYGSDLDTSVYGSGFPRVNDKKPESVEDEIWDKYCASPWNLNNLPKLQGSMLRAVHNNIAGVMVPWLYVGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSEAIAFEKVMRNCLPDLFDAQPDLLFQLVTMLDPSVLQENGVSVYSVIQEPGNFVITFPRSYHGGFNFGLNCAEAVNFAPADWLPHGGFGAELYQLYRKAAVLSHEELLCVVAKANDCDSKALPYLKKELHRIYAKEKNCREGLWSNGIIKSSPMSPKKCPEFVGTEEDPTCIICQQYLFLSAVVCCCRPSAFVCLEHCKHLCECKPNKHRLLYRHTLAELKQLVLLIDKYNFDETPQCRDLQRQLSCSDDSNALTKKVKGGHVSLAKLAEEWILRSSKIFQIPFSRDAYVNALKETEQFLWAGSEMDAVRAVAKNLIEAQNWAEGIKDCLCKIESWSCNRSHNLEKVDLEHVNNFLNLNPLPCIEPGHLKLKGYAEEAMILVQEIDSALSTSSKSSIPELEQLYSRACEVPIYVKEMEKLMARISALKMVINIIAWFSDSFFLSNLMILMKFFHPLFVWVDNVKKCILEKCPAAIEVDVLYRLKSEMLELQVQLPEVEMLMDLLRHVESCQARCNEILNGPINLKNVEVLLQELESITVNIPELKLLRQYHGDAVSWISHFNDVHVNIHEREDQENVVDELQCILKQGLLLRIQVDELPLVEVELKKAYCRKEALKARRTKMTLFSIQQLMEEAAMLQIEGEQLFVDVSGVLAAAMHWEERAAHIFATEAQMSDFEDVIRTSKDIHVILPSLDDVKDAISMAKSWLKNSKPFLGSSFPAAHPSCSLLKVEALKELVSQSKLLKISLEERTMIHSVLKNCLEWEHDSCSLLEEVDCLFNTNNIDNALINGLIPKIEHLVTMIESILETGLSLGFDFDEIPKLQNARSILQWCSKALSFCSVAPALPGIESLMENAEHLPVTCASSALCSSLIDGVKWLKKASEVIPVSCNGKICKLSDAEEVLSEVQRIKVSFPLMVGQLLKAIEKHKLWKEQILIFFGLKTEERSWSKLLQLKVIICFMYFGISFNVIQIKHTLDRSLYIYKKSRGCNPRDPCIHCFSDIKDQELLTCSICKDCYHLQCLGATLGHQSDAEAYVCSYCQFIGSGSISRNGGALRFGGKRPELNMLIELLSDAEGLCVGCVIEERDVVQQLVELAIACKDCLTELTDFTLAYLNRDLSIISEKLTTALKAVEMAGVYYNHGNNRLELALARNSWRVRVNKLLEDSQKPLIQHIQKILKEGLAISIPPEDHFRQKLTELKCIGLQWAENAKKVSMDSGALGLDEVCELITQGENLPVHFEKELKLLRARSMLYCICRKPYDQRAMIACDQCDEWYHFDCIKLSSAPKIYICPACKPHTGELSVLLSVNKERSTGAKYGEPQTPSPPHTESRRKNIEAKPSLKQMMPAAMDHGNILRYSDGIDCLFWRNRKPFRRVAKRRAEVESLSPFFHIQ* 1496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3074404 3119122 + Vvi2g327 Vvi2g327 783026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g327 1495 CDD PHD_SF 1098 1143 - -
Vvi2g327 1495 Pfam JmjC domain, hydroxylase 66 182 IPR003347 -
Vvi2g327 1495 Pfam PLU-1-like protein 580 867 IPR013637 -
Vvi2g327 1495 Pfam PLU-1-like protein 832 1039 IPR013637 -
Vvi2g327 1495 Gene3D Cupin 1 205 - -
Vvi2g327 1495 SUPERFAMILY FYVE/PHD zinc finger 1090 1147 IPR011011 -
Vvi2g327 1495 SUPERFAMILY FYVE/PHD zinc finger 1353 1404 IPR011011 -
Vvi2g327 1495 MobiDBLite consensus disorder prediction 1417 1431 - -
Vvi2g327 1495 MobiDBLite consensus disorder prediction 1417 1436 - -
Vvi2g327 1495 Pfam PHD-finger 1356 1399 IPR019787 -
Vvi2g327 1495 SUPERFAMILY Clavaminate synthase-like 19 214 - -
Vvi2g327 1495 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 748 - -
Vvi2g327 1495 Pfam C5HC2 zinc finger 276 328 IPR004198 -
Vvi2g327 1495 SMART cupin_9 33 199 IPR003347 -
Vvi2g327 1495 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 1 748 - -
Vvi2g327 1495 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1055 1146 IPR013083 -
Vvi2g327 1495 ProSitePatterns Zinc finger PHD-type signature. 1357 1397 IPR019786 -
Vvi2g327 1495 Gene3D Cupin 1351 1459 - -
Vvi2g327 1495 SMART PHD_3 1097 1144 IPR001965 -
Vvi2g327 1495 SMART PHD_3 1356 1398 IPR001965 -
Vvi2g327 1495 ProSiteProfiles JmjC domain profile. 33 199 IPR003347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g327 K11446 KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67] - vvi:100261599 2902.08
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g327 . . . . . . . Bma14g00076 . . . Cma15g01224 . Car15g01104 . . . . . . . . . . . . . . . . . Cone8ag0485 Cone12ag0310 . . . Csa05g00286 Chy09g01220 . . . . . . . . . . . Cmo15g01289 Cma06g00632 . Car06g00566 . . Cpe13g00159 Bhi12g00252 . . . . . . . . . . . . . . . . Cme09g01757
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010126 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14581 PF08429 PLU-1 2.80E-19 No_clan Vvi TR