Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g329 ATGGATGGAAGAGAAGCCATGGCCTTATCTGGGTCACCACCATATTATATACATAGAGGGGTTGTTGGGTCTGCTTCATTGTCTGGGTCTGTAGATCATTCACAGACCAATTTTCCTCATGGGTTTAACATGGCTGTGCCCTCTGGAGTACCACCGGCTGAGCCCGTAAAGAGGAAAAGAGGGAGACCCCGGAAATATGGTCCCGATGGGAATGTGTCTTTGGGACTGTCTCCCATGTCTGCTCGTCCTTCACTTGGATCTGGGTCGGTTACCCCGACGCAGAAACGGGGTAGGGGTCGGCCACCTGGTACTGGAAGGAAGCAACAATTGGCTACTCTTGGTGAATGGATGAACAGTTCTGCTGGACTGGCTTTTGCACCACATGTCATCAGCATGGCAGTTGGAGAGGACATTGCAACAAGAATATTATCATTTTCACAACAAAGGCCAAGGGCTCTGTGCATTTTGTCAGCCAGTGGTACGGTCTCTGCAGTAACTTTACGTCAGCCTACATCTTCCAGTGGCACTGTTACATATGAGGGCCGTTTCGAGATTTTATGTTTATCAGGTTCGTATTTGCCTGCTGAAACTGGTGGCCCCCGCAACCGAATTGGTGGTATAAGTGTTTCCCTTTGTAGTCCTGATGGTCATGTAATTGGGGGTGGAGTTGGAGGGATGCTTATAGCTGCAAGTCCAGTTCAGGTGGTAGCGTGTAGCTTTGTTTATGGCGGTTCTAAGACAAAGAACAAAAATGGGGATGAGCCTAAAGGTGATCAAAACTCAGGGCTTCAGCCAAGCGAGTCGGCTGCTCCATCAAGTGTTCCTCTTGGTCAACATTTCGCACCTATTTCAGCAATGGGCATGTGGCCCAGTTCACGACAGGTAGACCTGAGGAACCCCCACACTGATATTGACTTGACACGTGGATGA 930 49.35 MDGREAMALSGSPPYYIHRGVVGSASLSGSVDHSQTNFPHGFNMAVPSGVPPAEPVKRKRGRPRKYGPDGNVSLGLSPMSARPSLGSGSVTPTQKRGRGRPPGTGRKQQLATLGEWMNSSAGLAFAPHVISMAVGEDIATRILSFSQQRPRALCILSASGTVSAVTLRQPTSSSGTVTYEGRFEILCLSGSYLPAETGGPRNRIGGISVSLCSPDGHVIGGGVGGMLIAASPVQVVACSFVYGGSKTKNKNGDEPKGDQNSGLQPSESAAPSSVPLGQHFAPISAMGMWPSSRQVDLRNPHTDIDLTRG* 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3130322 3137368 + Vvi2g329 Vvi2g329 783028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g329 309 CDD DUF296 127 240 IPR005175 -
Vvi2g329 309 SMART AT_hook_2 57 69 IPR017956 GO:0003677
Vvi2g329 309 SMART AT_hook_2 95 107 IPR017956 GO:0003677
Vvi2g329 309 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 309 IPR039605 GO:0003680
Vvi2g329 309 MobiDBLite consensus disorder prediction 27 107 - -
Vvi2g329 309 MobiDBLite consensus disorder prediction 289 309 - -
Vvi2g329 309 MobiDBLite consensus disorder prediction 256 273 - -
Vvi2g329 309 MobiDBLite consensus disorder prediction 77 94 - -
Vvi2g329 309 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 5-LIKE 34 309 - -
Vvi2g329 309 Pfam Plants and Prokaryotes Conserved (PCC) domain 127 241 IPR005175 -
Vvi2g329 309 Gene3D - 127 252 - -
Vvi2g329 309 MobiDBLite consensus disorder prediction 27 42 - -
Vvi2g329 309 SUPERFAMILY AF0104/ALDC/Ptd012-like 125 242 - -
Vvi2g329 309 ProSiteProfiles PPC domain profile profile. 119 266 IPR005175 -
Vvi2g329 309 MobiDBLite consensus disorder prediction 247 277 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g329 Vvi15g896 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g329 - - vvi:100249560 560.451